miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6140 3' -55.8 NC_001826.1 + 24159 0.66 0.811333
Target:  5'- cAGUGAAGCuGCC--CCAGaCAGCAUa -3'
miRNA:   3'- uUUACUUCGuCGGacGGUCgGUCGUG- -5'
6140 3' -55.8 NC_001826.1 + 117558 0.66 0.792494
Target:  5'- cGGGUGAAgGCAGCa-GCCAGUcuacugaaCAGCAUa -3'
miRNA:   3'- -UUUACUU-CGUCGgaCGGUCG--------GUCGUG- -5'
6140 3' -55.8 NC_001826.1 + 15969 0.66 0.773009
Target:  5'- gAAAUGAuucAGgAGUUUgGCCAGCuCAGCAUa -3'
miRNA:   3'- -UUUACU---UCgUCGGA-CGGUCG-GUCGUG- -5'
6140 3' -55.8 NC_001826.1 + 117699 0.67 0.752964
Target:  5'- ---aGAGGCGGCCcccucugggugGCCAGaucuuCAGCGCu -3'
miRNA:   3'- uuuaCUUCGUCGGa----------CGGUCg----GUCGUG- -5'
6140 3' -55.8 NC_001826.1 + 68212 0.67 0.749914
Target:  5'- uAAAUGucuGCGGCCUGCCccuaagcgccuccaGGCCGuuGUGCa -3'
miRNA:   3'- -UUUACuu-CGUCGGACGG--------------UCGGU--CGUG- -5'
6140 3' -55.8 NC_001826.1 + 78981 0.67 0.742757
Target:  5'- --uUGAAGCAGCauacaaaaacCUGCCAGUCAcCAg -3'
miRNA:   3'- uuuACUUCGUCG----------GACGGUCGGUcGUg -5'
6140 3' -55.8 NC_001826.1 + 100222 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 100322 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 100422 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99922 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99822 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99723 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99623 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99523 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99423 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99123 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 99023 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 98923 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 100722 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5'
6140 3' -55.8 NC_001826.1 + 100522 0.67 0.722032
Target:  5'- ---gGGAGCGGgCUGcCCGGCCcggGGUGCg -3'
miRNA:   3'- uuuaCUUCGUCgGAC-GGUCGG---UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.