miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6141 5' -58.4 NC_001826.1 + 69908 0.66 0.770909
Target:  5'- aCUCGGGC-UCAgUCUCCCCAACa-- -3'
miRNA:   3'- aGGGUUCGcAGUgGGAGGGGUUGgac -5'
6141 5' -58.4 NC_001826.1 + 118288 0.66 0.770909
Target:  5'- gUCCCAGuGCcUC-CCCUCCCCccucCCUu -3'
miRNA:   3'- -AGGGUU-CGcAGuGGGAGGGGuu--GGAc -5'
6141 5' -58.4 NC_001826.1 + 34151 0.66 0.742153
Target:  5'- cUCCCAca-GUCAUCUUUCCUuGCCUGu -3'
miRNA:   3'- -AGGGUucgCAGUGGGAGGGGuUGGAC- -5'
6141 5' -58.4 NC_001826.1 + 16247 0.66 0.732363
Target:  5'- gUCCUAAGUGUCACCgUCUaCAaugucAUCUGg -3'
miRNA:   3'- -AGGGUUCGCAGUGGgAGGgGU-----UGGAC- -5'
6141 5' -58.4 NC_001826.1 + 24574 0.67 0.661899
Target:  5'- cUUCCAGGUggugagcugaGUCuagauaccucuACCCUCCCCAACUg- -3'
miRNA:   3'- -AGGGUUCG----------CAG-----------UGGGAGGGGUUGGac -5'
6141 5' -58.4 NC_001826.1 + 108034 0.68 0.631161
Target:  5'- gUCCCAcAGUG-UACUg-CCCCAACCUGu -3'
miRNA:   3'- -AGGGU-UCGCaGUGGgaGGGGUUGGAC- -5'
6141 5' -58.4 NC_001826.1 + 27875 0.68 0.611683
Target:  5'- cUCCCGAGCuGggGCCCggauccccccgguucCCCCGACCUu -3'
miRNA:   3'- -AGGGUUCG-CagUGGGa--------------GGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 28007 0.68 0.611683
Target:  5'- cUCCCGAGCuGggGCCCggauccccccgguucCCCCGACCUu -3'
miRNA:   3'- -AGGGUUCG-CagUGGGa--------------GGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 87226 0.69 0.590222
Target:  5'- aCCaCAGGCGUCAUCgUCgCCUGACCc- -3'
miRNA:   3'- aGG-GUUCGCAGUGGgAG-GGGUUGGac -5'
6141 5' -58.4 NC_001826.1 + 28140 0.69 0.580045
Target:  5'- cUCCCGAGCuGggGCCCgguUCCCCcACCUu -3'
miRNA:   3'- -AGGGUUCG-CagUGGG---AGGGGuUGGAc -5'
6141 5' -58.4 NC_001826.1 + 118117 0.69 0.569906
Target:  5'- gUCUGAGCGUCuuccACCCUUCCCucuggcCCUGa -3'
miRNA:   3'- aGGGUUCGCAG----UGGGAGGGGuu----GGAC- -5'
6141 5' -58.4 NC_001826.1 + 10293 0.7 0.514114
Target:  5'- cUCCCAuaugugacauaaaaaAGUGUgCACCUcccgaagucaagUCCCCAGCCUa -3'
miRNA:   3'- -AGGGU---------------UCGCA-GUGGG------------AGGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 119119 0.7 0.510209
Target:  5'- cCCCAGGCG-CGgCCgcuaccgCCCgGGCCUGa -3'
miRNA:   3'- aGGGUUCGCaGUgGGa------GGGgUUGGAC- -5'
6141 5' -58.4 NC_001826.1 + 81333 0.7 0.510209
Target:  5'- aCCCAuAGaccuGUCACUCUgCCCCcGCCUGg -3'
miRNA:   3'- aGGGU-UCg---CAGUGGGA-GGGGuUGGAC- -5'
6141 5' -58.4 NC_001826.1 + 104408 0.72 0.399989
Target:  5'- aUCCCGAGgGUCACC--CCCCAACa-- -3'
miRNA:   3'- -AGGGUUCgCAGUGGgaGGGGUUGgac -5'
6141 5' -58.4 NC_001826.1 + 28099 0.73 0.350868
Target:  5'- cUCCCGAGCuGggGCCCgguucCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGGa----GGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27834 0.73 0.350868
Target:  5'- cUCCCGAGCuGggGCCCggaucCCCCGACCUu -3'
miRNA:   3'- -AGGGUUCG-CagUGGGa----GGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27966 0.73 0.350868
Target:  5'- cUCCCGAGCuGggGCCCggaucCCCCGACCUu -3'
miRNA:   3'- -AGGGUUCG-CagUGGGa----GGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 28058 0.73 0.350868
Target:  5'- cUCCCGAGCuGggGCCCggaucCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGGa----GGGGUUGGAc -5'
6141 5' -58.4 NC_001826.1 + 27926 0.74 0.313322
Target:  5'- cUCCCGAGCuGggGCCCggucCCCCGACCUc -3'
miRNA:   3'- -AGGGUUCG-CagUGGGa---GGGGUUGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.