Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6147 | 5' | -58.6 | NC_001826.1 | + | 106393 | 1.06 | 0.001493 |
Target: 5'- uAGAGCCCCAUGCUGGAACAGCUCCCUu -3' miRNA: 3'- -UCUCGGGGUACGACCUUGUCGAGGGA- -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 107148 | 0.76 | 0.216154 |
Target: 5'- aAGAGCCCgugguugaaauuucuCAUGCUGGGaaACAGCUCUUUa -3' miRNA: 3'- -UCUCGGG---------------GUACGACCU--UGUCGAGGGA- -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 100006 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 100106 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 100206 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 100306 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 100406 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 100506 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 100606 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 100706 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99906 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99806 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99007 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99107 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99207 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99307 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99407 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99507 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99607 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99707 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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