Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6147 | 5' | -58.6 | NC_001826.1 | + | 4487 | 0.67 | 0.658879 |
Target: 5'- cAGGGCUC---GCUGGGACGGUaguUCCCg -3' miRNA: 3'- -UCUCGGGguaCGACCUUGUCG---AGGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 7632 | 0.67 | 0.668192 |
Target: 5'- --cGCCCCAUGCuuccguaUGGAACcuuGCUCUa- -3' miRNA: 3'- ucuCGGGGUACG-------ACCUUGu--CGAGGga -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 26890 | 0.66 | 0.700044 |
Target: 5'- cGGGCCCCA-GCUcgGGAGgGGaaCCCa -3' miRNA: 3'- uCUCGGGGUaCGA--CCUUgUCgaGGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 28092 | 0.67 | 0.627739 |
Target: 5'- -cGGCCCCcucccgaGCUGGGGCccGGUUCCCc -3' miRNA: 3'- ucUCGGGGua-----CGACCUUG--UCGAGGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 28133 | 0.67 | 0.627739 |
Target: 5'- -cGGCCCCcucccgaGCUGGGGCccGGUUCCCc -3' miRNA: 3'- ucUCGGGGua-----CGACCUUG--UCGAGGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 32488 | 0.66 | 0.730333 |
Target: 5'- cAGAGUCCCucaGCUGGuu--GCUaCCCUc -3' miRNA: 3'- -UCUCGGGGua-CGACCuuguCGA-GGGA- -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 47394 | 0.7 | 0.448116 |
Target: 5'- ---aCCCCAagauUGCUGGAAguGCUUCCUu -3' miRNA: 3'- ucucGGGGU----ACGACCUUguCGAGGGA- -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 67970 | 0.66 | 0.689818 |
Target: 5'- --uGCCCCAUGUUcGGGgguACAGCUaCCUc -3' miRNA: 3'- ucuCGGGGUACGA-CCU---UGUCGAgGGA- -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 85149 | 0.66 | 0.710212 |
Target: 5'- cGGGCCCUGUccuugGCUGGcAGCAGaCUUUCUa -3' miRNA: 3'- uCUCGGGGUA-----CGACC-UUGUC-GAGGGA- -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 98610 | 0.66 | 0.717289 |
Target: 5'- aGGAGCCCgG-GCUGGGucaggcuguuucugACAGCgUCCa- -3' miRNA: 3'- -UCUCGGGgUaCGACCU--------------UGUCG-AGGga -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 98907 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99007 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99107 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99207 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99307 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99407 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99507 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99534 | 0.67 | 0.658879 |
Target: 5'- cGGGGCCCCguccccccgGUuccccccaucccGCcggggGGGACGGCUCCCc -3' miRNA: 3'- -UCUCGGGG---------UA------------CGa----CCUUGUCGAGGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99607 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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6147 | 5' | -58.6 | NC_001826.1 | + | 99707 | 0.72 | 0.3453 |
Target: 5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3' miRNA: 3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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