miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6147 5' -58.6 NC_001826.1 + 100805 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100006 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100106 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100206 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100306 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100406 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100506 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100606 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 100706 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99906 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99806 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99707 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 98907 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99007 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99107 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99207 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99307 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99407 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99507 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5'
6147 5' -58.6 NC_001826.1 + 99607 0.72 0.3453
Target:  5'- cGGGGCCCCGgaGCgagGGAGCGgGCUgCCCg -3'
miRNA:   3'- -UCUCGGGGUa-CGa--CCUUGU-CGA-GGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.