Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 619 | 5' | -58.9 | AC_000017.1 | + | 10241 | 0.69 | 0.262393 |
|
Target: 5'- aCCAUCAACaCGGGcGCaUACCAC-CGCu -3' miRNA: 3'- -GGUGGUUGgGCCCuCG-GUGGUGaGCG- -5' |
|||||||
| 619 | 5' | -58.9 | AC_000017.1 | + | 24035 | 0.7 | 0.255119 |
|
Target: 5'- uCCACCAACCUGGaGGacgugucguccccGUCGCCG-UCGCc -3' miRNA: 3'- -GGUGGUUGGGCC-CU-------------CGGUGGUgAGCG- -5' |
|||||||
| 619 | 5' | -58.9 | AC_000017.1 | + | 18965 | 0.7 | 0.23066 |
|
Target: 5'- gCACCAGCCCGGG-GCUcaGgUACUCcgagGCg -3' miRNA: 3'- gGUGGUUGGGCCCuCGG--UgGUGAG----CG- -5' |
|||||||
| 619 | 5' | -58.9 | AC_000017.1 | + | 4176 | 0.71 | 0.196918 |
|
Target: 5'- aCCGCUGGuCCCGGGc-CUACCGCgcgCGCa -3' miRNA: 3'- -GGUGGUU-GGGCCCucGGUGGUGa--GCG- -5' |
|||||||
| 619 | 5' | -58.9 | AC_000017.1 | + | 11554 | 0.73 | 0.142197 |
|
Target: 5'- uUACCAGgUCGGcGGCCGCCACgugugCGCg -3' miRNA: 3'- gGUGGUUgGGCCcUCGGUGGUGa----GCG- -5' |
|||||||
| 619 | 5' | -58.9 | AC_000017.1 | + | 20455 | 1.12 | 0.000167 |
|
Target: 5'- uCCACCAACCCGGGAGCCACCACUCGCu -3' miRNA: 3'- -GGUGGUUGGGCCCUCGGUGGUGAGCG- -5' |
|||||||
| 619 | 5' | -58.9 | AC_000017.1 | + | 17341 | 0.66 | 0.443543 |
|
Target: 5'- gCCGCCuGCaCCGcGGcaucuGCCACCGC-CGa -3' miRNA: 3'- -GGUGGuUG-GGC-CCu----CGGUGGUGaGCg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home