miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6197 5' -51.9 NC_001844.1 + 79970 0.66 0.98527
Target:  5'- gGCGcGGAUU--GAGCGGGu--GGCGCg -3'
miRNA:   3'- -CGUaCCUGGuuUUCGCCUcuuCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 118965 0.66 0.985091
Target:  5'- -gAUGGGgUggGGGCGGgAGGugaaaauGGGCGUg -3'
miRNA:   3'- cgUACCUgGuuUUCGCC-UCU-------UCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 100395 0.66 0.983403
Target:  5'- uCAUGGgggcGCCAAAGcCGGAGAacucGGGCa- -3'
miRNA:   3'- cGUACC----UGGUUUUcGCCUCU----UCCGcg -5'
6197 5' -51.9 NC_001844.1 + 116741 0.66 0.981362
Target:  5'- --cUGGAUCGuacaccccaaAGAGCGGAcgcucagaGAAGGgGCa -3'
miRNA:   3'- cguACCUGGU----------UUUCGCCU--------CUUCCgCG- -5'
6197 5' -51.9 NC_001844.1 + 826 0.66 0.979139
Target:  5'- uCGUGGuuACCAGAAGCacgacGGuGAcacccuGGCGCg -3'
miRNA:   3'- cGUACC--UGGUUUUCG-----CCuCUu-----CCGCG- -5'
6197 5' -51.9 NC_001844.1 + 139626 0.67 0.974113
Target:  5'- cGCGUGcGuuauuucCCAgGAAGCGGAaauGGCGCa -3'
miRNA:   3'- -CGUAC-Cu------GGU-UUUCGCCUcuuCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 126101 0.67 0.971293
Target:  5'- gGCAUGgGACCGGuuuuGCGGGGuucugcauagcaGAGGuCGUc -3'
miRNA:   3'- -CGUAC-CUGGUUuu--CGCCUC------------UUCC-GCG- -5'
6197 5' -51.9 NC_001844.1 + 1149 0.67 0.968259
Target:  5'- -gGUGGGCaCAcAGAGaUGGAuaccgaGGAGGCGCg -3'
miRNA:   3'- cgUACCUG-GU-UUUC-GCCU------CUUCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 61662 0.67 0.968259
Target:  5'- -uGUGGAuCCAGuAGGCGGcGGGcAGGUGUa -3'
miRNA:   3'- cgUACCU-GGUU-UUCGCC-UCU-UCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 144224 0.67 0.965005
Target:  5'- ---aGGACCGcgcGGCuGAGguGGCGCu -3'
miRNA:   3'- cguaCCUGGUuu-UCGcCUCuuCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 120047 0.68 0.961523
Target:  5'- gGCGUuuuguucGGCCAaaacGAGGCGGGGGucgcgauuGGCGCu -3'
miRNA:   3'- -CGUAc------CUGGU----UUUCGCCUCUu-------CCGCG- -5'
6197 5' -51.9 NC_001844.1 + 80873 0.68 0.961523
Target:  5'- gGCAUcagcuGACCAAAgauagGGCGGGGAccuugggguccuAGGCGg -3'
miRNA:   3'- -CGUAc----CUGGUUU-----UCGCCUCU------------UCCGCg -5'
6197 5' -51.9 NC_001844.1 + 65429 0.68 0.957808
Target:  5'- -aGUGGAgCGuAGAGCGGGGc--GCGCg -3'
miRNA:   3'- cgUACCUgGU-UUUCGCCUCuucCGCG- -5'
6197 5' -51.9 NC_001844.1 + 121869 0.68 0.957808
Target:  5'- -aGUGGGCgCAAAAaaGGAGGcGGGUGCu -3'
miRNA:   3'- cgUACCUG-GUUUUcgCCUCU-UCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 105960 0.68 0.957808
Target:  5'- aGCAUGGACguGuuuGGGCG-AGGAcGCGCu -3'
miRNA:   3'- -CGUACCUGguU---UUCGCcUCUUcCGCG- -5'
6197 5' -51.9 NC_001844.1 + 113177 0.68 0.945216
Target:  5'- gGUAUcGGACgAGGAGgaCGGAGAAgacuGGUGCa -3'
miRNA:   3'- -CGUA-CCUGgUUUUC--GCCUCUU----CCGCG- -5'
6197 5' -51.9 NC_001844.1 + 116302 0.69 0.93558
Target:  5'- cCAUGGcCCGGGucGGacgccccaccacCGGGGAGGGUGCg -3'
miRNA:   3'- cGUACCuGGUUU--UC------------GCCUCUUCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 16762 0.7 0.907053
Target:  5'- aGCcUGGGCU---GGCaGAGuGGGCGCg -3'
miRNA:   3'- -CGuACCUGGuuuUCGcCUCuUCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 138759 0.7 0.907053
Target:  5'- ---cGGugUgcguGUGGGGggGGCGCa -3'
miRNA:   3'- cguaCCugGuuuuCGCCUCuuCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 5151 0.7 0.893881
Target:  5'- ---cGGACCGucuGGCGGGu--GGCGCu -3'
miRNA:   3'- cguaCCUGGUuu-UCGCCUcuuCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.