Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6197 | 5' | -51.9 | NC_001844.1 | + | 145530 | 0.7 | 0.893196 |
Target: 5'- -gGUGuGACCGGAAGCGGAagugacgcaagcgGAAGGgGa -3' miRNA: 3'- cgUAC-CUGGUUUUCGCCU-------------CUUCCgCg -5' |
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6197 | 5' | -51.9 | NC_001844.1 | + | 121460 | 0.7 | 0.886927 |
Target: 5'- aGCGUGGAgCcuAGGCGcacuGAccGGGCGCg -3' miRNA: 3'- -CGUACCUgGuuUUCGCcu--CU--UCCGCG- -5' |
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6197 | 5' | -51.9 | NC_001844.1 | + | 53337 | 0.72 | 0.831865 |
Target: 5'- uGCAagUGGACCAAAccAGCGGGGuguaauAGGagaGUa -3' miRNA: 3'- -CGU--ACCUGGUUU--UCGCCUCu-----UCCg--CG- -5' |
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6197 | 5' | -51.9 | NC_001844.1 | + | 114429 | 0.72 | 0.831865 |
Target: 5'- uGCAacGGGCCuccGGCcaGGGAGGGCGCg -3' miRNA: 3'- -CGUa-CCUGGuuuUCGc-CUCUUCCGCG- -5' |
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6197 | 5' | -51.9 | NC_001844.1 | + | 114791 | 0.72 | 0.823165 |
Target: 5'- ---aGGGgCAAGAGCGG-GAAgcGGCGCu -3' miRNA: 3'- cguaCCUgGUUUUCGCCuCUU--CCGCG- -5' |
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6197 | 5' | -51.9 | NC_001844.1 | + | 143035 | 0.73 | 0.786608 |
Target: 5'- -aGUGGGCCAcAAGGCGGGGAugcgggAGGUcugGCu -3' miRNA: 3'- cgUACCUGGU-UUUCGCCUCU------UCCG---CG- -5' |
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6197 | 5' | -51.9 | NC_001844.1 | + | 140863 | 0.77 | 0.560219 |
Target: 5'- cGCG-GGGCuCGGGGGcCGGGGAAGGCGg -3' miRNA: 3'- -CGUaCCUG-GUUUUC-GCCUCUUCCGCg -5' |
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6197 | 5' | -51.9 | NC_001844.1 | + | 2352 | 1.15 | 0.002562 |
Target: 5'- aGCAUGGACCAAAAGCGGAGAAGGCGCa -3' miRNA: 3'- -CGUACCUGGUUUUCGCCUCUUCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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