miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6203 5' -56.4 NC_001844.1 + 102013 0.66 0.896119
Target:  5'- uUCGGAggagguaGACGGCGUUAuuuucuccUCUGAGCCCUc -3'
miRNA:   3'- -AGCCUa------UUGUCGCGGU--------GGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 113230 0.66 0.889462
Target:  5'- -gGGGUGagcccgGCAGCGCaguugAUCCGAcgcGCCCCc -3'
miRNA:   3'- agCCUAU------UGUCGCGg----UGGGUU---CGGGG- -5'
6203 5' -56.4 NC_001844.1 + 114976 0.66 0.868153
Target:  5'- gCGGGgggccGACAaccugcucccGgGCCACCCAGacccaggcucGCCCCu -3'
miRNA:   3'- aGCCUa----UUGU----------CgCGGUGGGUU----------CGGGG- -5'
6203 5' -56.4 NC_001844.1 + 115265 0.66 0.868153
Target:  5'- gCGGA-GGgAGC-CCggGCCCGGGCCUCg -3'
miRNA:   3'- aGCCUaUUgUCGcGG--UGGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 113311 0.67 0.860619
Target:  5'- cUGGA--GCuGUGCCuuCCCGAGUCCg -3'
miRNA:   3'- aGCCUauUGuCGCGGu-GGGUUCGGGg -5'
6203 5' -56.4 NC_001844.1 + 101000 0.67 0.860619
Target:  5'- gCGGAUuuGCGGCGaaguguguaaCugCCAcGCCCUa -3'
miRNA:   3'- aGCCUAu-UGUCGCg---------GugGGUuCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 116481 0.67 0.860619
Target:  5'- cCGGGgccucuaAGCGcaagcGCuGCCACCCAAGaCCCa -3'
miRNA:   3'- aGCCUa------UUGU-----CG-CGGUGGGUUCgGGG- -5'
6203 5' -56.4 NC_001844.1 + 144547 0.67 0.85288
Target:  5'- cCGGGc-GCAGCcauGCC-CCaAGGCCCCa -3'
miRNA:   3'- aGCCUauUGUCG---CGGuGGgUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 78850 0.67 0.836807
Target:  5'- gCGGggGGUAGgGUUACgUAAGCCCCa -3'
miRNA:   3'- aGCCuaUUGUCgCGGUGgGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 120358 0.67 0.836807
Target:  5'- gCGGAgcGCAGaaCGCU-CCCG-GCCCCc -3'
miRNA:   3'- aGCCUauUGUC--GCGGuGGGUuCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 144296 0.67 0.835984
Target:  5'- uUCGGGUAGaGGCGCgCaaacgcgGCCUcGGCCCUc -3'
miRNA:   3'- -AGCCUAUUgUCGCG-G-------UGGGuUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 138692 0.67 0.834331
Target:  5'- gUUGGGUAgguugcuagcuggcACAGUGCCAUgCGcGCuCCCg -3'
miRNA:   3'- -AGCCUAU--------------UGUCGCGGUGgGUuCG-GGG- -5'
6203 5' -56.4 NC_001844.1 + 116381 0.67 0.819991
Target:  5'- gUUGGAcaugAACuGCuCCuCUCAGGCCCCa -3'
miRNA:   3'- -AGCCUa---UUGuCGcGGuGGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 13081 0.68 0.811324
Target:  5'- aCcGAUGGgGGCGaCCGCUgcAGCCCCa -3'
miRNA:   3'- aGcCUAUUgUCGC-GGUGGguUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 142214 0.68 0.811324
Target:  5'- gCGGucGUAGCGGCggcucaugGCCACCgAGGCUgCCg -3'
miRNA:   3'- aGCC--UAUUGUCG--------CGGUGGgUUCGG-GG- -5'
6203 5' -56.4 NC_001844.1 + 136648 0.68 0.802494
Target:  5'- cCGGu---CAGUG-CGCCUAGGCUCCa -3'
miRNA:   3'- aGCCuauuGUCGCgGUGGGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 60746 0.68 0.802494
Target:  5'- gCGGuuaucuaugauuGUAcCGGCGCCACUCAccGCCUCg -3'
miRNA:   3'- aGCC------------UAUuGUCGCGGUGGGUu-CGGGG- -5'
6203 5' -56.4 NC_001844.1 + 15937 0.68 0.802494
Target:  5'- cCGGGUGgugaAUAGCGCgCACCCAugacugguaAGCgCUg -3'
miRNA:   3'- aGCCUAU----UGUCGCG-GUGGGU---------UCGgGG- -5'
6203 5' -56.4 NC_001844.1 + 141775 0.68 0.793509
Target:  5'- cCGGAUGgugugaGCAGCgGCuCGCgcuggcagguuCCGAGCCCUg -3'
miRNA:   3'- aGCCUAU------UGUCG-CG-GUG-----------GGUUCGGGG- -5'
6203 5' -56.4 NC_001844.1 + 5420 0.68 0.793509
Target:  5'- gUGGugaguuuuGCAGCGUCGCCUAAaaaCCCCa -3'
miRNA:   3'- aGCCuau-----UGUCGCGGUGGGUUc--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.