miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
621 3' -62.4 AC_000017.1 + 23917 1.1 0.000089
Target:  5'- aCGCGCUGGUGCCGCGCACACCCAGCCc -3'
miRNA:   3'- -GCGCGACCACGGCGCGUGUGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 34904 0.74 0.070554
Target:  5'- cCGCGCUGGU-CCGUGCAgACCugcacgauuauguuCAGCUg -3'
miRNA:   3'- -GCGCGACCAcGGCGCGUgUGG--------------GUCGG- -5'
621 3' -62.4 AC_000017.1 + 5402 0.73 0.079703
Target:  5'- -cUGCUGGUGCUGaaGCGCugCCGGUCu -3'
miRNA:   3'- gcGCGACCACGGCg-CGUGugGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 16440 0.73 0.079703
Target:  5'- uGCGC--GUGcCCGUGCGCACCC-GCCc -3'
miRNA:   3'- gCGCGacCAC-GGCGCGUGUGGGuCGG- -5'
621 3' -62.4 AC_000017.1 + 23098 0.73 0.084335
Target:  5'- aCGCGa-GGUGCUGCGUGCACgacgCGGCCu -3'
miRNA:   3'- -GCGCgaCCACGGCGCGUGUGg---GUCGG- -5'
621 3' -62.4 AC_000017.1 + 24816 0.73 0.086016
Target:  5'- aGUGCUGGUGgaacuugagggugaCaaCGCGCGCCUAGCCg -3'
miRNA:   3'- gCGCGACCAC--------------GgcGCGUGUGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 13339 0.72 0.102646
Target:  5'- gGCGCUGGacaUGaCCGCGCGCAacauggaaCCGGgCa -3'
miRNA:   3'- gCGCGACC---AC-GGCGCGUGUg-------GGUCgG- -5'
621 3' -62.4 AC_000017.1 + 22799 0.71 0.114731
Target:  5'- gCGUGCUGGccagCGUGCAuCACCCGGCg -3'
miRNA:   3'- -GCGCGACCacg-GCGCGU-GUGGGUCGg -5'
621 3' -62.4 AC_000017.1 + 16002 0.7 0.128134
Target:  5'- gCGCGCccUGG-GgCGCGCACaaACgCGGCCg -3'
miRNA:   3'- -GCGCG--ACCaCgGCGCGUG--UGgGUCGG- -5'
621 3' -62.4 AC_000017.1 + 16481 0.7 0.128134
Target:  5'- aCGCGCag--GCCGCuaaccgagucGCGCACCCAGUa -3'
miRNA:   3'- -GCGCGaccaCGGCG----------CGUGUGGGUCGg -5'
621 3' -62.4 AC_000017.1 + 12149 0.7 0.131705
Target:  5'- uGCGCUGGgccccaaGCCGaCGCGC-CCUggaggcagcuggGGCCg -3'
miRNA:   3'- gCGCGACCa------CGGC-GCGUGuGGG------------UCGG- -5'
621 3' -62.4 AC_000017.1 + 16065 0.7 0.135367
Target:  5'- aCGCGgUGGUGgaggaggCGCGCaacuacACGCCCAcGCCg -3'
miRNA:   3'- -GCGCgACCACg------GCGCG------UGUGGGU-CGG- -5'
621 3' -62.4 AC_000017.1 + 12755 0.7 0.135367
Target:  5'- uGCcCUGcUGCUGCGCGCGCUCAcGCUg -3'
miRNA:   3'- gCGcGACcACGGCGCGUGUGGGU-CGG- -5'
621 3' -62.4 AC_000017.1 + 7292 0.7 0.146523
Target:  5'- aCGCGCUacccguagaaaagGGaUGCUGCGCcUACCaGGCCg -3'
miRNA:   3'- -GCGCGA-------------CC-ACGGCGCGuGUGGgUCGG- -5'
621 3' -62.4 AC_000017.1 + 25035 0.7 0.146922
Target:  5'- gCGCGCUGGcuUGagaCGCGCGaGCCU-GCCg -3'
miRNA:   3'- -GCGCGACC--ACg--GCGCGUgUGGGuCGG- -5'
621 3' -62.4 AC_000017.1 + 12257 0.69 0.15056
Target:  5'- gCGCGCgGGUGCCacCGCcagcccagguccgGC-CCCAGCUg -3'
miRNA:   3'- -GCGCGaCCACGGc-GCG-------------UGuGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 16198 0.69 0.155118
Target:  5'- aGCGCcGG-GCUcCGCGCACCaCGGUCu -3'
miRNA:   3'- gCGCGaCCaCGGcGCGUGUGG-GUCGG- -5'
621 3' -62.4 AC_000017.1 + 9104 0.69 0.159369
Target:  5'- uCGCGCaGGUgGUCaUGCGCGCCCGcgauGCCg -3'
miRNA:   3'- -GCGCGaCCA-CGGcGCGUGUGGGU----CGG- -5'
621 3' -62.4 AC_000017.1 + 8683 0.69 0.159369
Target:  5'- --aGCUGGUGCUGCGCAcggaggUugCUGGCg -3'
miRNA:   3'- gcgCGACCACGGCGCGU------GugGGUCGg -5'
621 3' -62.4 AC_000017.1 + 18919 0.69 0.163725
Target:  5'- cCGgGCUGGUGCa--GUuCGCCCGcGCCa -3'
miRNA:   3'- -GCgCGACCACGgcgCGuGUGGGU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.