miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
621 3' -62.4 AC_000017.1 + 5402 0.73 0.079703
Target:  5'- -cUGCUGGUGCUGaaGCGCugCCGGUCu -3'
miRNA:   3'- gcGCGACCACGGCg-CGUGugGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 7292 0.7 0.146523
Target:  5'- aCGCGCUacccguagaaaagGGaUGCUGCGCcUACCaGGCCg -3'
miRNA:   3'- -GCGCGA-------------CC-ACGGCGCGuGUGGgUCGG- -5'
621 3' -62.4 AC_000017.1 + 8683 0.69 0.159369
Target:  5'- --aGCUGGUGCUGCGCAcggaggUugCUGGCg -3'
miRNA:   3'- gcgCGACCACGGCGCGU------GugGGUCGg -5'
621 3' -62.4 AC_000017.1 + 8710 0.68 0.177442
Target:  5'- gCGCGC-GGcGCCGaCGUGC-CCCuGCCc -3'
miRNA:   3'- -GCGCGaCCaCGGC-GCGUGuGGGuCGG- -5'
621 3' -62.4 AC_000017.1 + 9104 0.69 0.159369
Target:  5'- uCGCGCaGGUgGUCaUGCGCGCCCGcgauGCCg -3'
miRNA:   3'- -GCGCGaCCA-CGGcGCGUGUGGGU----CGG- -5'
621 3' -62.4 AC_000017.1 + 9374 0.66 0.275648
Target:  5'- aGCGCgaGGUG-CGCGaCACugUC-GCCg -3'
miRNA:   3'- gCGCGa-CCACgGCGC-GUGugGGuCGG- -5'
621 3' -62.4 AC_000017.1 + 10882 0.66 0.255599
Target:  5'- -cCGCUuacGCCGCGCGCGgCCAGUg -3'
miRNA:   3'- gcGCGAccaCGGCGCGUGUgGGUCGg -5'
621 3' -62.4 AC_000017.1 + 11303 0.67 0.236761
Target:  5'- gGCGCUccuaGCCGCGcCAgGCCCucGCCc -3'
miRNA:   3'- gCGCGAcca-CGGCGC-GUgUGGGu-CGG- -5'
621 3' -62.4 AC_000017.1 + 11463 0.66 0.268828
Target:  5'- aCGCGCggaccGGgauuagucccGCgCGCGCACACguggCGGCCg -3'
miRNA:   3'- -GCGCGa----CCa---------CG-GCGCGUGUGg---GUCGG- -5'
621 3' -62.4 AC_000017.1 + 12149 0.7 0.131705
Target:  5'- uGCGCUGGgccccaaGCCGaCGCGC-CCUggaggcagcuggGGCCg -3'
miRNA:   3'- gCGCGACCa------CGGC-GCGUGuGGG------------UCGG- -5'
621 3' -62.4 AC_000017.1 + 12257 0.69 0.15056
Target:  5'- gCGCGCgGGUGCCacCGCcagcccagguccgGC-CCCAGCUg -3'
miRNA:   3'- -GCGCGaCCACGGc-GCG-------------UGuGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 12482 0.67 0.236761
Target:  5'- aCGCGUcaGG-GuuGCGCGCAgUCAGCg -3'
miRNA:   3'- -GCGCGa-CCaCggCGCGUGUgGGUCGg -5'
621 3' -62.4 AC_000017.1 + 12491 0.66 0.275648
Target:  5'- aGCGgUGGUcccGgCGCGCGCAaacCCCAcGCa -3'
miRNA:   3'- gCGCgACCA---CgGCGCGUGU---GGGU-CGg -5'
621 3' -62.4 AC_000017.1 + 12547 0.66 0.268828
Target:  5'- aCGCGCUG--GCCGaaaacaggGC-CAUCCGGCCc -3'
miRNA:   3'- -GCGCGACcaCGGCg-------CGuGUGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 12561 0.67 0.2191
Target:  5'- uCGUGCguggGGU-UUGCGCGCGCCgGGaCCa -3'
miRNA:   3'- -GCGCGa---CCAcGGCGCGUGUGGgUC-GG- -5'
621 3' -62.4 AC_000017.1 + 12729 0.67 0.207961
Target:  5'- uGCGCcacGGccUCGCGCACAUcccccaCCAGCCg -3'
miRNA:   3'- gCGCGa--CCacGGCGCGUGUG------GGUCGG- -5'
621 3' -62.4 AC_000017.1 + 12755 0.7 0.135367
Target:  5'- uGCcCUGcUGCUGCGCGCGCUCAcGCUg -3'
miRNA:   3'- gCGcGACcACGGCGCGUGUGGGU-CGG- -5'
621 3' -62.4 AC_000017.1 + 13339 0.72 0.102646
Target:  5'- gGCGCUGGacaUGaCCGCGCGCAacauggaaCCGGgCa -3'
miRNA:   3'- gCGCGACC---AC-GGCGCGUGUg-------GGUCgG- -5'
621 3' -62.4 AC_000017.1 + 13960 0.69 0.17276
Target:  5'- gGCGC-GG-GCCGgGCACAUCCcuguGCUc -3'
miRNA:   3'- gCGCGaCCaCGGCgCGUGUGGGu---CGG- -5'
621 3' -62.4 AC_000017.1 + 16002 0.7 0.128134
Target:  5'- gCGCGCccUGG-GgCGCGCACaaACgCGGCCg -3'
miRNA:   3'- -GCGCG--ACCaCgGCGCGUG--UGgGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.