miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
621 3' -62.4 AC_000017.1 + 23620 0.66 0.282605
Target:  5'- cCGCGCcacugGGUcgucuucauucaGCCGC-CGCACCguGCg -3'
miRNA:   3'- -GCGCGa----CCA------------CGGCGcGUGUGGguCGg -5'
621 3' -62.4 AC_000017.1 + 25483 0.66 0.249186
Target:  5'- aGCGCUccGUGgC-CGCGCACCUGGCg -3'
miRNA:   3'- gCGCGAc-CACgGcGCGUGUGGGUCGg -5'
621 3' -62.4 AC_000017.1 + 16922 0.66 0.255599
Target:  5'- -aUGCUGGcguUGCCGCuggacgaggGCaacccaACACCUAGCCu -3'
miRNA:   3'- gcGCGACC---ACGGCG---------CG------UGUGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 17865 0.66 0.262146
Target:  5'- gGCGaUUGGcGCCGUGCccggaauuGCAUCCguGGCCu -3'
miRNA:   3'- gCGC-GACCaCGGCGCG--------UGUGGG--UCGG- -5'
621 3' -62.4 AC_000017.1 + 18541 0.66 0.262146
Target:  5'- -aCGCUGGaccUGCCucccccCGCugACACCCAGCa -3'
miRNA:   3'- gcGCGACC---ACGGc-----GCG--UGUGGGUCGg -5'
621 3' -62.4 AC_000017.1 + 12547 0.66 0.268828
Target:  5'- aCGCGCUG--GCCGaaaacaggGC-CAUCCGGCCc -3'
miRNA:   3'- -GCGCGACcaCGGCg-------CGuGUGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 11463 0.66 0.268828
Target:  5'- aCGCGCggaccGGgauuagucccGCgCGCGCACACguggCGGCCg -3'
miRNA:   3'- -GCGCGa----CCa---------CG-GCGCGUGUGg---GUCGG- -5'
621 3' -62.4 AC_000017.1 + 12491 0.66 0.275648
Target:  5'- aGCGgUGGUcccGgCGCGCGCAaacCCCAcGCa -3'
miRNA:   3'- gCGCgACCA---CgGCGCGUGU---GGGU-CGg -5'
621 3' -62.4 AC_000017.1 + 33259 0.66 0.281903
Target:  5'- gGCGgUGGUGCUGCagcaGCGCGCgaauaaacugcugCC-GCCg -3'
miRNA:   3'- gCGCgACCACGGCG----CGUGUG-------------GGuCGG- -5'
621 3' -62.4 AC_000017.1 + 17592 0.66 0.246659
Target:  5'- uCGCGaaggaggcaggaccCUGGUGCUgccaacaGCGCGCuaccacCCCAGCa -3'
miRNA:   3'- -GCGC--------------GACCACGG-------CGCGUGu-----GGGUCGg -5'
621 3' -62.4 AC_000017.1 + 16234 0.68 0.182237
Target:  5'- aCGCGCggcGGcgGCCcugcuuaaccGCGCACgucGCaCCGGCCg -3'
miRNA:   3'- -GCGCGa--CCa-CGG----------CGCGUG---UG-GGUCGG- -5'
621 3' -62.4 AC_000017.1 + 18919 0.69 0.163725
Target:  5'- cCGgGCUGGUGCa--GUuCGCCCGcGCCa -3'
miRNA:   3'- -GCgCGACCACGgcgCGuGUGGGU-CGG- -5'
621 3' -62.4 AC_000017.1 + 16440 0.73 0.079703
Target:  5'- uGCGC--GUGcCCGUGCGCACCC-GCCc -3'
miRNA:   3'- gCGCGacCAC-GGCGCGUGUGGGuCGG- -5'
621 3' -62.4 AC_000017.1 + 24816 0.73 0.086016
Target:  5'- aGUGCUGGUGgaacuugagggugaCaaCGCGCGCCUAGCCg -3'
miRNA:   3'- gCGCGACCAC--------------GgcGCGUGUGGGUCGG- -5'
621 3' -62.4 AC_000017.1 + 13339 0.72 0.102646
Target:  5'- gGCGCUGGacaUGaCCGCGCGCAacauggaaCCGGgCa -3'
miRNA:   3'- gCGCGACC---AC-GGCGCGUGUg-------GGUCgG- -5'
621 3' -62.4 AC_000017.1 + 16002 0.7 0.128134
Target:  5'- gCGCGCccUGG-GgCGCGCACaaACgCGGCCg -3'
miRNA:   3'- -GCGCG--ACCaCgGCGCGUG--UGgGUCGG- -5'
621 3' -62.4 AC_000017.1 + 12149 0.7 0.131705
Target:  5'- uGCGCUGGgccccaaGCCGaCGCGC-CCUggaggcagcuggGGCCg -3'
miRNA:   3'- gCGCGACCa------CGGC-GCGUGuGGG------------UCGG- -5'
621 3' -62.4 AC_000017.1 + 16065 0.7 0.135367
Target:  5'- aCGCGgUGGUGgaggaggCGCGCaacuacACGCCCAcGCCg -3'
miRNA:   3'- -GCGCgACCACg------GCGCG------UGUGGGU-CGG- -5'
621 3' -62.4 AC_000017.1 + 25035 0.7 0.146922
Target:  5'- gCGCGCUGGcuUGagaCGCGCGaGCCU-GCCg -3'
miRNA:   3'- -GCGCGACC--ACg--GCGCGUgUGGGuCGG- -5'
621 3' -62.4 AC_000017.1 + 8683 0.69 0.159369
Target:  5'- --aGCUGGUGCUGCGCAcggaggUugCUGGCg -3'
miRNA:   3'- gcgCGACCACGGCGCGU------GugGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.