miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6210 3' -53.5 NC_001844.1 + 61529 0.66 0.963533
Target:  5'- uGggUUGACGCGGGaguACUGgGCUgagaacuuGGCGUg -3'
miRNA:   3'- -CuuGGCUGCGUUU---UGACgCGG--------UCGCG- -5'
6210 3' -53.5 NC_001844.1 + 88340 0.66 0.959978
Target:  5'- gGggUCGGaacguUGCAcgacuGCUGCGaaaCAGCGCa -3'
miRNA:   3'- -CuuGGCU-----GCGUuu---UGACGCg--GUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 44775 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44343 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44721 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44667 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44613 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44559 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44505 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44451 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 44397 0.66 0.95961
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggaGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG-------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 15336 0.66 0.957734
Target:  5'- aAAUCaGCGCGAGaccuuggugcuugugGCUGCGCgGGgGCa -3'
miRNA:   3'- cUUGGcUGCGUUU---------------UGACGCGgUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 140663 0.66 0.956191
Target:  5'- --uCCGGaGCAAAaucGCUGCGCUGGCu- -3'
miRNA:   3'- cuuGGCUgCGUUU---UGACGCGGUCGcg -5'
6210 3' -53.5 NC_001844.1 + 44828 0.66 0.956191
Target:  5'- gGAGCCGGgGCc--GCUGCggguuuggacggGCCGGgGCc -3'
miRNA:   3'- -CUUGGCUgCGuuuUGACG------------CGGUCgCG- -5'
6210 3' -53.5 NC_001844.1 + 64101 0.66 0.956191
Target:  5'- cGGACCG-CGC----CUGCGC-AGUGCg -3'
miRNA:   3'- -CUUGGCuGCGuuuuGACGCGgUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 142776 0.66 0.952167
Target:  5'- aGAACCG-CGC-GGACcGCGa-GGCGCa -3'
miRNA:   3'- -CUUGGCuGCGuUUUGaCGCggUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 128429 0.66 0.952167
Target:  5'- uGGCCGAUGUgguaGAggUUGUGUUAGCuGCg -3'
miRNA:   3'- cUUGGCUGCG----UUuuGACGCGGUCG-CG- -5'
6210 3' -53.5 NC_001844.1 + 4535 0.66 0.952167
Target:  5'- cAACUcuCGCAGAGCuaUGCGaccaCCAGCGCc -3'
miRNA:   3'- cUUGGcuGCGUUUUG--ACGC----GGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 136772 0.66 0.947903
Target:  5'- cGGCCGGgGUgAGAugUGUGCCGGaagGCa -3'
miRNA:   3'- cUUGGCUgCG-UUUugACGCGGUCg--CG- -5'
6210 3' -53.5 NC_001844.1 + 115653 0.66 0.947903
Target:  5'- ---aCGGCGCAAGACgGCGgCC-GCGg -3'
miRNA:   3'- cuugGCUGCGUUUUGaCGC-GGuCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.