miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6300 3' -53.6 NC_001844.1 + 96642 0.66 0.96407
Target:  5'- ---aGCACCGCAGacCUGugGCCA-GGCg -3'
miRNA:   3'- cgacUGUGGUGUC--GACugUGGUgUCG- -5'
6300 3' -53.6 NC_001844.1 + 115807 0.66 0.96407
Target:  5'- cGCgacGACGCCggGCGGCagGACucCCACucGGCg -3'
miRNA:   3'- -CGa--CUGUGG--UGUCGa-CUGu-GGUG--UCG- -5'
6300 3' -53.6 NC_001844.1 + 105529 0.66 0.96407
Target:  5'- aGCaauaGCCACGGU---CACCGCAGCg -3'
miRNA:   3'- -CGacugUGGUGUCGacuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 40719 0.66 0.960553
Target:  5'- cGCUuGCAUCucuauCGGCUGACuuUGCGGCu -3'
miRNA:   3'- -CGAcUGUGGu----GUCGACUGugGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 3905 0.66 0.960553
Target:  5'- aGCUGGgGCUACuGGUgGACAUCACAa- -3'
miRNA:   3'- -CGACUgUGGUG-UCGaCUGUGGUGUcg -5'
6300 3' -53.6 NC_001844.1 + 96248 0.66 0.960553
Target:  5'- cCUGAUAgCGCGGUgguaACACCAC-GCa -3'
miRNA:   3'- cGACUGUgGUGUCGac--UGUGGUGuCG- -5'
6300 3' -53.6 NC_001844.1 + 4462 0.66 0.958333
Target:  5'- cUUGGCGCgCAUAGCucgggccguugggagUGGCGCCGaGGCg -3'
miRNA:   3'- cGACUGUG-GUGUCG---------------ACUGUGGUgUCG- -5'
6300 3' -53.6 NC_001844.1 + 77855 0.66 0.956806
Target:  5'- aGCUG-UugUAUAGCUcuCAcCCGCAGCg -3'
miRNA:   3'- -CGACuGugGUGUCGAcuGU-GGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 128245 0.66 0.956806
Target:  5'- uGUUGGCGuaGCAGCUGugGUaguaGCAGCu -3'
miRNA:   3'- -CGACUGUggUGUCGACugUGg---UGUCG- -5'
6300 3' -53.6 NC_001844.1 + 114161 0.67 0.939422
Target:  5'- aGCggucccACGCCugGGCUGGCAacuggaCugGGCc -3'
miRNA:   3'- -CGac----UGUGGugUCGACUGUg-----GugUCG- -5'
6300 3' -53.6 NC_001844.1 + 3939 0.67 0.939422
Target:  5'- --aGAgACCAUGGCgGGUGCUACAGCa -3'
miRNA:   3'- cgaCUgUGGUGUCGaCUGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 78911 0.67 0.934462
Target:  5'- cGCUGGCAU--CAGCaGAUGCCAUcGCu -3'
miRNA:   3'- -CGACUGUGguGUCGaCUGUGGUGuCG- -5'
6300 3' -53.6 NC_001844.1 + 79338 0.67 0.929251
Target:  5'- uGUUG-CGCCaAUAGCUGACGaugCACuGCa -3'
miRNA:   3'- -CGACuGUGG-UGUCGACUGUg--GUGuCG- -5'
6300 3' -53.6 NC_001844.1 + 93878 0.67 0.929251
Target:  5'- --aGACuACaCACAGgaGA-ACCACAGCg -3'
miRNA:   3'- cgaCUG-UG-GUGUCgaCUgUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 118389 0.68 0.899456
Target:  5'- -aUGAUauuuACCAggaAGUgucgUGGCACCACAGCg -3'
miRNA:   3'- cgACUG----UGGUg--UCG----ACUGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 73838 0.69 0.878652
Target:  5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 73802 0.69 0.878652
Target:  5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 73731 0.69 0.878652
Target:  5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 73695 0.69 0.878652
Target:  5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 114389 0.69 0.878652
Target:  5'- aGCUGGCugC-CAGCgGACcgcuccGCCGCcgGGCu -3'
miRNA:   3'- -CGACUGugGuGUCGaCUG------UGGUG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.