miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 3' -54.8 NC_001847.1 + 32514 0.66 0.913639
Target:  5'- -cUGGCCGCGUACAcgcgGCUgucggaGGcGAUg -3'
miRNA:   3'- cuACCGGCGCGUGUa---CGAa-----CCaCUAg -5'
6344 3' -54.8 NC_001847.1 + 109947 0.66 0.907434
Target:  5'- --cGGCCGCGCGCGggGCUcgcUGGc---- -3'
miRNA:   3'- cuaCCGGCGCGUGUa-CGA---ACCacuag -5'
6344 3' -54.8 NC_001847.1 + 33898 0.66 0.894275
Target:  5'- cGUGGCCGCGgGCGUGCa-GGa---- -3'
miRNA:   3'- cUACCGGCGCgUGUACGaaCCacuag -5'
6344 3' -54.8 NC_001847.1 + 63333 0.66 0.894275
Target:  5'- cGAUGGCguacugGCGCACgAUGUUUGGUa--- -3'
miRNA:   3'- -CUACCGg-----CGCGUG-UACGAACCAcuag -5'
6344 3' -54.8 NC_001847.1 + 131429 0.66 0.892905
Target:  5'- cGUGGCCgGCGCGCGcgauUGCcgcgccuaccugUGGUGcgCg -3'
miRNA:   3'- cUACCGG-CGCGUGU----ACGa-----------ACCACuaG- -5'
6344 3' -54.8 NC_001847.1 + 118991 0.66 0.887327
Target:  5'- --cGGCgGCGUgcgACAUGC-UGGcgcUGAUCg -3'
miRNA:   3'- cuaCCGgCGCG---UGUACGaACC---ACUAG- -5'
6344 3' -54.8 NC_001847.1 + 57115 0.66 0.880139
Target:  5'- ---cGCCGCGCGCAUGUUgGGgGAc- -3'
miRNA:   3'- cuacCGGCGCGUGUACGAaCCaCUag -5'
6344 3' -54.8 NC_001847.1 + 95212 0.66 0.880139
Target:  5'- -cUGGCCGCGC---UGCUcuuUGGgggcaUGAUCg -3'
miRNA:   3'- cuACCGGCGCGuguACGA---ACC-----ACUAG- -5'
6344 3' -54.8 NC_001847.1 + 128832 0.66 0.880139
Target:  5'- cGUGGCCGCGCGCAU-CgaGGccGAccUCg -3'
miRNA:   3'- cUACCGGCGCGUGUAcGaaCCa-CU--AG- -5'
6344 3' -54.8 NC_001847.1 + 26345 0.66 0.880139
Target:  5'- --aGGCgGCGUACAUGCagcucucccgGGUGGg- -3'
miRNA:   3'- cuaCCGgCGCGUGUACGaa--------CCACUag -5'
6344 3' -54.8 NC_001847.1 + 62564 0.66 0.880139
Target:  5'- -uUGGCCcagcccGCGCaucGCGUGCa-GGUGGUCc -3'
miRNA:   3'- cuACCGG------CGCG---UGUACGaaCCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 87939 0.67 0.872715
Target:  5'- --cGGCCGCGCAC--GC--GGUGAg- -3'
miRNA:   3'- cuaCCGGCGCGUGuaCGaaCCACUag -5'
6344 3' -54.8 NC_001847.1 + 112143 0.67 0.872715
Target:  5'- cGGUGGCCGaaaaGUACGUGCUca-UGAUUc -3'
miRNA:   3'- -CUACCGGCg---CGUGUACGAaccACUAG- -5'
6344 3' -54.8 NC_001847.1 + 110809 0.67 0.872715
Target:  5'- --aGGCCGCGCGCG-GCgUGGcGcgCc -3'
miRNA:   3'- cuaCCGGCGCGUGUaCGaACCaCuaG- -5'
6344 3' -54.8 NC_001847.1 + 41890 0.67 0.872715
Target:  5'- --cGGCC-CGCGCGgcgagGCagaGGUGGUCg -3'
miRNA:   3'- cuaCCGGcGCGUGUa----CGaa-CCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 128081 0.67 0.865061
Target:  5'- --cGGCuCGC-CGCGUGCcUUGGUGGc- -3'
miRNA:   3'- cuaCCG-GCGcGUGUACG-AACCACUag -5'
6344 3' -54.8 NC_001847.1 + 127246 0.67 0.865061
Target:  5'- --cGGCCGcCGCGCGccccgcgcgGCUaGGUGGUUu -3'
miRNA:   3'- cuaCCGGC-GCGUGUa--------CGAaCCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 4200 0.67 0.862721
Target:  5'- --gGGCCGCGCGCAggcagccaaagcccUGCgcGGUGc-- -3'
miRNA:   3'- cuaCCGGCGCGUGU--------------ACGaaCCACuag -5'
6344 3' -54.8 NC_001847.1 + 111316 0.67 0.861937
Target:  5'- --gGGCCGUGCGCGcGCUggaccgcgagcaGUGGUCg -3'
miRNA:   3'- cuaCCGGCGCGUGUaCGAac----------CACUAG- -5'
6344 3' -54.8 NC_001847.1 + 50387 0.67 0.857184
Target:  5'- -cUGGCCGUgGC-CAUGCUcgugcugcgguUGGUGcgCg -3'
miRNA:   3'- cuACCGGCG-CGuGUACGA-----------ACCACuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.