miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 3' -54.8 NC_001847.1 + 6154 0.8 0.229232
Target:  5'- cGGUGGCggugacggCGCGCAgGUGCUcGGUGAUCu -3'
miRNA:   3'- -CUACCG--------GCGCGUgUACGAaCCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 4200 0.67 0.862721
Target:  5'- --gGGCCGCGCGCAggcagccaaagcccUGCgcGGUGc-- -3'
miRNA:   3'- cuaCCGGCGCGUGU--------------ACGaaCCACuag -5'
6344 3' -54.8 NC_001847.1 + 95212 0.66 0.880139
Target:  5'- -cUGGCCGCGC---UGCUcuuUGGgggcaUGAUCg -3'
miRNA:   3'- cuACCGGCGCGuguACGA---ACC-----ACUAG- -5'
6344 3' -54.8 NC_001847.1 + 32514 0.66 0.913639
Target:  5'- -cUGGCCGCGUACAcgcgGCUgucggaGGcGAUg -3'
miRNA:   3'- cuACCGGCGCGUGUa---CGAa-----CCaCUAg -5'
6344 3' -54.8 NC_001847.1 + 82671 0.69 0.738027
Target:  5'- --cGcGCCGCGCuCGUGCU--GUGGUCa -3'
miRNA:   3'- cuaC-CGGCGCGuGUACGAacCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 133423 0.69 0.76779
Target:  5'- -cUGGCCGCgGCGCG-GCggcGGcUGAUCg -3'
miRNA:   3'- cuACCGGCG-CGUGUaCGaa-CC-ACUAG- -5'
6344 3' -54.8 NC_001847.1 + 120653 0.68 0.805627
Target:  5'- -uUGGCCGCGUuuguacACA-GCUUcGGUGAg- -3'
miRNA:   3'- cuACCGGCGCG------UGUaCGAA-CCACUag -5'
6344 3' -54.8 NC_001847.1 + 74099 0.68 0.809273
Target:  5'- uGAUGGCCGCGUACc-GCUgccgguucccggccgUGGUGcugCg -3'
miRNA:   3'- -CUACCGGCGCGUGuaCGA---------------ACCACua-G- -5'
6344 3' -54.8 NC_001847.1 + 46610 0.68 0.832278
Target:  5'- --cGGCCucgcgGCGCACGaGCgUGGUGAa- -3'
miRNA:   3'- cuaCCGG-----CGCGUGUaCGaACCACUag -5'
6344 3' -54.8 NC_001847.1 + 82465 0.67 0.857184
Target:  5'- --cGGCCGCGUgcgGCGUGCcgUGG-GAc- -3'
miRNA:   3'- cuaCCGGCGCG---UGUACGa-ACCaCUag -5'
6344 3' -54.8 NC_001847.1 + 68275 0.67 0.844131
Target:  5'- -uUGGgCGCGUACAcgaagcccgagagcGCgUUGGUGAUCg -3'
miRNA:   3'- cuACCgGCGCGUGUa-------------CG-AACCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 69347 0.68 0.823577
Target:  5'- -cUGGCgGCGCugGUGCUggcgcgcgcGGcGGUCu -3'
miRNA:   3'- cuACCGgCGCGugUACGAa--------CCaCUAG- -5'
6344 3' -54.8 NC_001847.1 + 59505 0.74 0.469827
Target:  5'- gGGUGcGCCGaggcCGCACcgGCUUGGUGcgCu -3'
miRNA:   3'- -CUAC-CGGC----GCGUGuaCGAACCACuaG- -5'
6344 3' -54.8 NC_001847.1 + 72370 0.67 0.849089
Target:  5'- cAUGGCCgaGCGCACcucgGUggUGGUGGUg -3'
miRNA:   3'- cUACCGG--CGCGUGua--CGa-ACCACUAg -5'
6344 3' -54.8 NC_001847.1 + 70659 0.73 0.550024
Target:  5'- cGUGGCCGCGCAUcUGCUggGGcUGGa- -3'
miRNA:   3'- cUACCGGCGCGUGuACGAa-CC-ACUag -5'
6344 3' -54.8 NC_001847.1 + 101767 0.68 0.81469
Target:  5'- --cGGCCGCcaggagGCGCAgacUGCUgagGGUGAg- -3'
miRNA:   3'- cuaCCGGCG------CGUGU---ACGAa--CCACUag -5'
6344 3' -54.8 NC_001847.1 + 10285 0.67 0.857184
Target:  5'- cGcgGGCCGCGCGCucgccagucaGUGCggcGGUGcugCg -3'
miRNA:   3'- -CuaCCGGCGCGUG----------UACGaa-CCACua-G- -5'
6344 3' -54.8 NC_001847.1 + 87939 0.67 0.872715
Target:  5'- --cGGCCGCGCAC--GC--GGUGAg- -3'
miRNA:   3'- cuaCCGGCGCGUGuaCGaaCCACUag -5'
6344 3' -54.8 NC_001847.1 + 74501 0.69 0.738027
Target:  5'- --cGGCCGCGCGCAcccucgUGCUgaacaUGGUcuUCa -3'
miRNA:   3'- cuaCCGGCGCGUGU------ACGA-----ACCAcuAG- -5'
6344 3' -54.8 NC_001847.1 + 102515 0.69 0.777467
Target:  5'- --gGGCagaGCGCGCGccGCgccGGUGAUCg -3'
miRNA:   3'- cuaCCGg--CGCGUGUa-CGaa-CCACUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.