Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6344 | 3' | -54.8 | NC_001847.1 | + | 126782 | 0.73 | 0.509264 |
Target: 5'- ---uGCCGCGCccuACGUGUUUGGUcGAUCg -3' miRNA: 3'- cuacCGGCGCG---UGUACGAACCA-CUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 33330 | 0.68 | 0.823577 |
Target: 5'- cGUGGCgGCGCGC-UGCgugacGGUGGg- -3' miRNA: 3'- cUACCGgCGCGUGuACGaa---CCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 110681 | 0.68 | 0.796395 |
Target: 5'- ---uGCCGCGCuGCGUGCgcgagGGUGAg- -3' miRNA: 3'- cuacCGGCGCG-UGUACGaa---CCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 105904 | 0.68 | 0.796395 |
Target: 5'- --cGGCCGCGgGgcCAUGCagUGGcgGAUCg -3' miRNA: 3'- cuaCCGGCGCgU--GUACGa-ACCa-CUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 30610 | 0.69 | 0.76779 |
Target: 5'- -cUGGCCGCgGCGCG-GCggcGGcUGAUCg -3' miRNA: 3'- cuACCGGCG-CGUGUaCGaa-CC-ACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 116423 | 0.69 | 0.76779 |
Target: 5'- --gGGCCGCGCGCuuggGCUcgagggcGGUGggCg -3' miRNA: 3'- cuaCCGGCGCGUGua--CGAa------CCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 12322 | 0.71 | 0.665606 |
Target: 5'- cGGUGGgCGCGCccGCcgGCUcgcUGGUGAg- -3' miRNA: 3'- -CUACCgGCGCG--UGuaCGA---ACCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 55049 | 0.72 | 0.595939 |
Target: 5'- aGGUGGCCGCGUucgucgcgcgguucaGCcgGC-UGGUGggCa -3' miRNA: 3'- -CUACCGGCGCG---------------UGuaCGaACCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 134519 | 0.73 | 0.5295 |
Target: 5'- --cGGCCGCgGCGCAUGU--GGUGGUa -3' miRNA: 3'- cuaCCGGCG-CGUGUACGaaCCACUAg -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 50387 | 0.67 | 0.857184 |
Target: 5'- -cUGGCCGUgGC-CAUGCUcgugcugcgguUGGUGcgCg -3' miRNA: 3'- cuACCGGCG-CGuGUACGA-----------ACCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 118651 | 0.67 | 0.857184 |
Target: 5'- --aGGCCGCGCGCGggagGCgcaagagaGGUG-UCc -3' miRNA: 3'- cuaCCGGCGCGUGUa---CGaa------CCACuAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 111316 | 0.67 | 0.861937 |
Target: 5'- --gGGCCGUGCGCGcGCUggaccgcgagcaGUGGUCg -3' miRNA: 3'- cuaCCGGCGCGUGUaCGAac----------CACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 131429 | 0.66 | 0.892905 |
Target: 5'- cGUGGCCgGCGCGCGcgauUGCcgcgccuaccugUGGUGcgCg -3' miRNA: 3'- cUACCGG-CGCGUGU----ACGa-----------ACCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 128832 | 0.66 | 0.880139 |
Target: 5'- cGUGGCCGCGCGCAU-CgaGGccGAccUCg -3' miRNA: 3'- cUACCGGCGCGUGUAcGaaCCa-CU--AG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 62564 | 0.66 | 0.880139 |
Target: 5'- -uUGGCCcagcccGCGCaucGCGUGCa-GGUGGUCc -3' miRNA: 3'- cuACCGG------CGCG---UGUACGaaCCACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 112143 | 0.67 | 0.872715 |
Target: 5'- cGGUGGCCGaaaaGUACGUGCUca-UGAUUc -3' miRNA: 3'- -CUACCGGCg---CGUGUACGAaccACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 110809 | 0.67 | 0.872715 |
Target: 5'- --aGGCCGCGCGCG-GCgUGGcGcgCc -3' miRNA: 3'- cuaCCGGCGCGUGUaCGaACCaCuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 41890 | 0.67 | 0.872715 |
Target: 5'- --cGGCC-CGCGCGgcgagGCagaGGUGGUCg -3' miRNA: 3'- cuaCCGGcGCGUGUa----CGaa-CCACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 128081 | 0.67 | 0.865061 |
Target: 5'- --cGGCuCGC-CGCGUGCcUUGGUGGc- -3' miRNA: 3'- cuaCCG-GCGcGUGUACG-AACCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 127246 | 0.67 | 0.865061 |
Target: 5'- --cGGCCGcCGCGCGccccgcgcgGCUaGGUGGUUu -3' miRNA: 3'- cuaCCGGC-GCGUGUa--------CGAaCCACUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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