Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6344 | 3' | -54.8 | NC_001847.1 | + | 4200 | 0.67 | 0.862721 |
Target: 5'- --gGGCCGCGCGCAggcagccaaagcccUGCgcGGUGc-- -3' miRNA: 3'- cuaCCGGCGCGUGU--------------ACGaaCCACuag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 6154 | 0.8 | 0.229232 |
Target: 5'- cGGUGGCggugacggCGCGCAgGUGCUcGGUGAUCu -3' miRNA: 3'- -CUACCG--------GCGCGUgUACGAaCCACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 10285 | 0.67 | 0.857184 |
Target: 5'- cGcgGGCCGCGCGCucgccagucaGUGCggcGGUGcugCg -3' miRNA: 3'- -CuaCCGGCGCGUG----------UACGaa-CCACua-G- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 12322 | 0.71 | 0.665606 |
Target: 5'- cGGUGGgCGCGCccGCcgGCUcgcUGGUGAg- -3' miRNA: 3'- -CUACCgGCGCG--UGuaCGA---ACCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 15101 | 0.67 | 0.840785 |
Target: 5'- --gGGCCGCGCuCAUGCUgacGGcccUGAc- -3' miRNA: 3'- cuaCCGGCGCGuGUACGAa--CC---ACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 26345 | 0.66 | 0.880139 |
Target: 5'- --aGGCgGCGUACAUGCagcucucccgGGUGGg- -3' miRNA: 3'- cuaCCGgCGCGUGUACGaa--------CCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 30610 | 0.69 | 0.76779 |
Target: 5'- -cUGGCCGCgGCGCG-GCggcGGcUGAUCg -3' miRNA: 3'- cuACCGGCG-CGUGUaCGaa-CC-ACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 32514 | 0.66 | 0.913639 |
Target: 5'- -cUGGCCGCGUACAcgcgGCUgucggaGGcGAUg -3' miRNA: 3'- cuACCGGCGCGUGUa---CGAa-----CCaCUAg -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 33330 | 0.68 | 0.823577 |
Target: 5'- cGUGGCgGCGCGC-UGCgugacGGUGGg- -3' miRNA: 3'- cUACCGgCGCGUGuACGaa---CCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 33898 | 0.66 | 0.894275 |
Target: 5'- cGUGGCCGCGgGCGUGCa-GGa---- -3' miRNA: 3'- cUACCGGCGCgUGUACGaaCCacuag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 41890 | 0.67 | 0.872715 |
Target: 5'- --cGGCC-CGCGCGgcgagGCagaGGUGGUCg -3' miRNA: 3'- cuaCCGGcGCGUGUa----CGaa-CCACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 46610 | 0.68 | 0.832278 |
Target: 5'- --cGGCCucgcgGCGCACGaGCgUGGUGAa- -3' miRNA: 3'- cuaCCGG-----CGCGUGUaCGaACCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 50387 | 0.67 | 0.857184 |
Target: 5'- -cUGGCCGUgGC-CAUGCUcgugcugcgguUGGUGcgCg -3' miRNA: 3'- cuACCGGCG-CGuGUACGA-----------ACCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 55049 | 0.72 | 0.595939 |
Target: 5'- aGGUGGCCGCGUucgucgcgcgguucaGCcgGC-UGGUGggCa -3' miRNA: 3'- -CUACCGGCGCG---------------UGuaCGaACCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 57115 | 0.66 | 0.880139 |
Target: 5'- ---cGCCGCGCGCAUGUUgGGgGAc- -3' miRNA: 3'- cuacCGGCGCGUGUACGAaCCaCUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 59505 | 0.74 | 0.469827 |
Target: 5'- gGGUGcGCCGaggcCGCACcgGCUUGGUGcgCu -3' miRNA: 3'- -CUAC-CGGC----GCGUGuaCGAACCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 62564 | 0.66 | 0.880139 |
Target: 5'- -uUGGCCcagcccGCGCaucGCGUGCa-GGUGGUCc -3' miRNA: 3'- cuACCGG------CGCG---UGUACGaaCCACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 63333 | 0.66 | 0.894275 |
Target: 5'- cGAUGGCguacugGCGCACgAUGUUUGGUa--- -3' miRNA: 3'- -CUACCGg-----CGCGUG-UACGAACCAcuag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 68275 | 0.67 | 0.844131 |
Target: 5'- -uUGGgCGCGUACAcgaagcccgagagcGCgUUGGUGAUCg -3' miRNA: 3'- cuACCgGCGCGUGUa-------------CG-AACCACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 69347 | 0.68 | 0.823577 |
Target: 5'- -cUGGCgGCGCugGUGCUggcgcgcgcGGcGGUCu -3' miRNA: 3'- cuACCGgCGCGugUACGAa--------CCaCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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