miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 3' -54.8 NC_001847.1 + 135012 1.09 0.002473
Target:  5'- aGAUGGCCGCGCACAUGCUUGGUGAUCu -3'
miRNA:   3'- -CUACCGGCGCGUGUACGAACCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 79251 0.81 0.195273
Target:  5'- aAUGGCCGCGUACGUGCUgcccgcccaggucgUGGUcacGAUCa -3'
miRNA:   3'- cUACCGGCGCGUGUACGA--------------ACCA---CUAG- -5'
6344 3' -54.8 NC_001847.1 + 6154 0.8 0.229232
Target:  5'- cGGUGGCggugacggCGCGCAgGUGCUcGGUGAUCu -3'
miRNA:   3'- -CUACCG--------GCGCGUgUACGAaCCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 59505 0.74 0.469827
Target:  5'- gGGUGcGCCGaggcCGCACcgGCUUGGUGcgCu -3'
miRNA:   3'- -CUAC-CGGC----GCGUGuaCGAACCACuaG- -5'
6344 3' -54.8 NC_001847.1 + 134519 0.73 0.5295
Target:  5'- --cGGCCGCgGCGCAUGU--GGUGGUa -3'
miRNA:   3'- cuaCCGGCG-CGUGUACGaaCCACUAg -5'
6344 3' -54.8 NC_001847.1 + 126782 0.73 0.509264
Target:  5'- ---uGCCGCGCccuACGUGUUUGGUcGAUCg -3'
miRNA:   3'- cuacCGGCGCG---UGUACGAACCA-CUAG- -5'
6344 3' -54.8 NC_001847.1 + 70659 0.73 0.550024
Target:  5'- cGUGGCCGCGCAUcUGCUggGGcUGGa- -3'
miRNA:   3'- cUACCGGCGCGUGuACGAa-CC-ACUag -5'
6344 3' -54.8 NC_001847.1 + 55049 0.72 0.595939
Target:  5'- aGGUGGCCGCGUucgucgcgcgguucaGCcgGC-UGGUGggCa -3'
miRNA:   3'- -CUACCGGCGCG---------------UGuaCGaACCACuaG- -5'
6344 3' -54.8 NC_001847.1 + 12322 0.71 0.665606
Target:  5'- cGGUGGgCGCGCccGCcgGCUcgcUGGUGAg- -3'
miRNA:   3'- -CUACCgGCGCG--UGuaCGA---ACCACUag -5'
6344 3' -54.8 NC_001847.1 + 102515 0.69 0.777467
Target:  5'- --gGGCagaGCGCGCGccGCgccGGUGAUCg -3'
miRNA:   3'- cuaCCGg--CGCGUGUa-CGaa-CCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 74501 0.69 0.738027
Target:  5'- --cGGCCGCGCGCAcccucgUGCUgaacaUGGUcuUCa -3'
miRNA:   3'- cuaCCGGCGCGUGU------ACGA-----ACCAcuAG- -5'
6344 3' -54.8 NC_001847.1 + 133423 0.69 0.76779
Target:  5'- -cUGGCCGCgGCGCG-GCggcGGcUGAUCg -3'
miRNA:   3'- cuACCGGCG-CGUGUaCGaa-CC-ACUAG- -5'
6344 3' -54.8 NC_001847.1 + 82671 0.69 0.738027
Target:  5'- --cGcGCCGCGCuCGUGCU--GUGGUCa -3'
miRNA:   3'- cuaC-CGGCGCGuGUACGAacCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 116423 0.69 0.76779
Target:  5'- --gGGCCGCGCGCuuggGCUcgagggcGGUGggCg -3'
miRNA:   3'- cuaCCGGCGCGUGua--CGAa------CCACuaG- -5'
6344 3' -54.8 NC_001847.1 + 30610 0.69 0.76779
Target:  5'- -cUGGCCGCgGCGCG-GCggcGGcUGAUCg -3'
miRNA:   3'- cuACCGGCG-CGUGUaCGaa-CC-ACUAG- -5'
6344 3' -54.8 NC_001847.1 + 105904 0.68 0.796395
Target:  5'- --cGGCCGCGgGgcCAUGCagUGGcgGAUCg -3'
miRNA:   3'- cuaCCGGCGCgU--GUACGa-ACCa-CUAG- -5'
6344 3' -54.8 NC_001847.1 + 110681 0.68 0.796395
Target:  5'- ---uGCCGCGCuGCGUGCgcgagGGUGAg- -3'
miRNA:   3'- cuacCGGCGCG-UGUACGaa---CCACUag -5'
6344 3' -54.8 NC_001847.1 + 33330 0.68 0.823577
Target:  5'- cGUGGCgGCGCGC-UGCgugacGGUGGg- -3'
miRNA:   3'- cUACCGgCGCGUGuACGaa---CCACUag -5'
6344 3' -54.8 NC_001847.1 + 74099 0.68 0.809273
Target:  5'- uGAUGGCCGCGUACc-GCUgccgguucccggccgUGGUGcugCg -3'
miRNA:   3'- -CUACCGGCGCGUGuaCGA---------------ACCACua-G- -5'
6344 3' -54.8 NC_001847.1 + 120653 0.68 0.805627
Target:  5'- -uUGGCCGCGUuuguacACA-GCUUcGGUGAg- -3'
miRNA:   3'- cuACCGGCGCG------UGUaCGAA-CCACUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.