miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 3' -54.8 NC_001847.1 + 33330 0.68 0.823577
Target:  5'- cGUGGCgGCGCGC-UGCgugacGGUGGg- -3'
miRNA:   3'- cUACCGgCGCGUGuACGaa---CCACUag -5'
6344 3' -54.8 NC_001847.1 + 69347 0.68 0.823577
Target:  5'- -cUGGCgGCGCugGUGCUggcgcgcgcGGcGGUCu -3'
miRNA:   3'- cuACCGgCGCGugUACGAa--------CCaCUAG- -5'
6344 3' -54.8 NC_001847.1 + 46610 0.68 0.832278
Target:  5'- --cGGCCucgcgGCGCACGaGCgUGGUGAa- -3'
miRNA:   3'- cuaCCGG-----CGCGUGUaCGaACCACUag -5'
6344 3' -54.8 NC_001847.1 + 15101 0.67 0.840785
Target:  5'- --gGGCCGCGCuCAUGCUgacGGcccUGAc- -3'
miRNA:   3'- cuaCCGGCGCGuGUACGAa--CC---ACUag -5'
6344 3' -54.8 NC_001847.1 + 68275 0.67 0.844131
Target:  5'- -uUGGgCGCGUACAcgaagcccgagagcGCgUUGGUGAUCg -3'
miRNA:   3'- cuACCgGCGCGUGUa-------------CG-AACCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 72370 0.67 0.849089
Target:  5'- cAUGGCCgaGCGCACcucgGUggUGGUGGUg -3'
miRNA:   3'- cUACCGG--CGCGUGua--CGa-ACCACUAg -5'
6344 3' -54.8 NC_001847.1 + 50387 0.67 0.857184
Target:  5'- -cUGGCCGUgGC-CAUGCUcgugcugcgguUGGUGcgCg -3'
miRNA:   3'- cuACCGGCG-CGuGUACGA-----------ACCACuaG- -5'
6344 3' -54.8 NC_001847.1 + 118651 0.67 0.857184
Target:  5'- --aGGCCGCGCGCGggagGCgcaagagaGGUG-UCc -3'
miRNA:   3'- cuaCCGGCGCGUGUa---CGaa------CCACuAG- -5'
6344 3' -54.8 NC_001847.1 + 10285 0.67 0.857184
Target:  5'- cGcgGGCCGCGCGCucgccagucaGUGCggcGGUGcugCg -3'
miRNA:   3'- -CuaCCGGCGCGUG----------UACGaa-CCACua-G- -5'
6344 3' -54.8 NC_001847.1 + 82465 0.67 0.857184
Target:  5'- --cGGCCGCGUgcgGCGUGCcgUGG-GAc- -3'
miRNA:   3'- cuaCCGGCGCG---UGUACGa-ACCaCUag -5'
6344 3' -54.8 NC_001847.1 + 111316 0.67 0.861937
Target:  5'- --gGGCCGUGCGCGcGCUggaccgcgagcaGUGGUCg -3'
miRNA:   3'- cuaCCGGCGCGUGUaCGAac----------CACUAG- -5'
6344 3' -54.8 NC_001847.1 + 4200 0.67 0.862721
Target:  5'- --gGGCCGCGCGCAggcagccaaagcccUGCgcGGUGc-- -3'
miRNA:   3'- cuaCCGGCGCGUGU--------------ACGaaCCACuag -5'
6344 3' -54.8 NC_001847.1 + 127246 0.67 0.865061
Target:  5'- --cGGCCGcCGCGCGccccgcgcgGCUaGGUGGUUu -3'
miRNA:   3'- cuaCCGGC-GCGUGUa--------CGAaCCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 128081 0.67 0.865061
Target:  5'- --cGGCuCGC-CGCGUGCcUUGGUGGc- -3'
miRNA:   3'- cuaCCG-GCGcGUGUACG-AACCACUag -5'
6344 3' -54.8 NC_001847.1 + 41890 0.67 0.872715
Target:  5'- --cGGCC-CGCGCGgcgagGCagaGGUGGUCg -3'
miRNA:   3'- cuaCCGGcGCGUGUa----CGaa-CCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 110809 0.67 0.872715
Target:  5'- --aGGCCGCGCGCG-GCgUGGcGcgCc -3'
miRNA:   3'- cuaCCGGCGCGUGUaCGaACCaCuaG- -5'
6344 3' -54.8 NC_001847.1 + 112143 0.67 0.872715
Target:  5'- cGGUGGCCGaaaaGUACGUGCUca-UGAUUc -3'
miRNA:   3'- -CUACCGGCg---CGUGUACGAaccACUAG- -5'
6344 3' -54.8 NC_001847.1 + 87939 0.67 0.872715
Target:  5'- --cGGCCGCGCAC--GC--GGUGAg- -3'
miRNA:   3'- cuaCCGGCGCGUGuaCGaaCCACUag -5'
6344 3' -54.8 NC_001847.1 + 62564 0.66 0.880139
Target:  5'- -uUGGCCcagcccGCGCaucGCGUGCa-GGUGGUCc -3'
miRNA:   3'- cuACCGG------CGCG---UGUACGaaCCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 128832 0.66 0.880139
Target:  5'- cGUGGCCGCGCGCAU-CgaGGccGAccUCg -3'
miRNA:   3'- cUACCGGCGCGUGUAcGaaCCa-CU--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.