Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 6344 | 3' | -54.8 | NC_001847.1 | + | 95212 | 0.66 | 0.880139 |
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Target: 5'- -cUGGCCGCGC---UGCUcuuUGGgggcaUGAUCg -3' miRNA: 3'- cuACCGGCGCGuguACGA---ACC-----ACUAG- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 128832 | 0.66 | 0.880139 |
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Target: 5'- cGUGGCCGCGCGCAU-CgaGGccGAccUCg -3' miRNA: 3'- cUACCGGCGCGUGUAcGaaCCa-CU--AG- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 62564 | 0.66 | 0.880139 |
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Target: 5'- -uUGGCCcagcccGCGCaucGCGUGCa-GGUGGUCc -3' miRNA: 3'- cuACCGG------CGCG---UGUACGaaCCACUAG- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 118991 | 0.66 | 0.887327 |
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Target: 5'- --cGGCgGCGUgcgACAUGC-UGGcgcUGAUCg -3' miRNA: 3'- cuaCCGgCGCG---UGUACGaACC---ACUAG- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 131429 | 0.66 | 0.892905 |
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Target: 5'- cGUGGCCgGCGCGCGcgauUGCcgcgccuaccugUGGUGcgCg -3' miRNA: 3'- cUACCGG-CGCGUGU----ACGa-----------ACCACuaG- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 33898 | 0.66 | 0.894275 |
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Target: 5'- cGUGGCCGCGgGCGUGCa-GGa---- -3' miRNA: 3'- cUACCGGCGCgUGUACGaaCCacuag -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 63333 | 0.66 | 0.894275 |
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Target: 5'- cGAUGGCguacugGCGCACgAUGUUUGGUa--- -3' miRNA: 3'- -CUACCGg-----CGCGUG-UACGAACCAcuag -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 109947 | 0.66 | 0.907434 |
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Target: 5'- --cGGCCGCGCGCGggGCUcgcUGGc---- -3' miRNA: 3'- cuaCCGGCGCGUGUa-CGA---ACCacuag -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 32514 | 0.66 | 0.913639 |
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Target: 5'- -cUGGCCGCGUACAcgcgGCUgucggaGGcGAUg -3' miRNA: 3'- cuACCGGCGCGUGUa---CGAa-----CCaCUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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