Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6344 | 3' | -54.8 | NC_001847.1 | + | 134519 | 0.73 | 0.5295 |
Target: 5'- --cGGCCGCgGCGCAUGU--GGUGGUa -3' miRNA: 3'- cuaCCGGCG-CGUGUACGaaCCACUAg -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 12322 | 0.71 | 0.665606 |
Target: 5'- cGGUGGgCGCGCccGCcgGCUcgcUGGUGAg- -3' miRNA: 3'- -CUACCgGCGCG--UGuaCGA---ACCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 55049 | 0.72 | 0.595939 |
Target: 5'- aGGUGGCCGCGUucgucgcgcgguucaGCcgGC-UGGUGggCa -3' miRNA: 3'- -CUACCGGCGCG---------------UGuaCGaACCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 116423 | 0.69 | 0.76779 |
Target: 5'- --gGGCCGCGCGCuuggGCUcgagggcGGUGggCg -3' miRNA: 3'- cuaCCGGCGCGUGua--CGAa------CCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 30610 | 0.69 | 0.76779 |
Target: 5'- -cUGGCCGCgGCGCG-GCggcGGcUGAUCg -3' miRNA: 3'- cuACCGGCG-CGUGUaCGaa-CC-ACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 105904 | 0.68 | 0.796395 |
Target: 5'- --cGGCCGCGgGgcCAUGCagUGGcgGAUCg -3' miRNA: 3'- cuaCCGGCGCgU--GUACGa-ACCa-CUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 110681 | 0.68 | 0.796395 |
Target: 5'- ---uGCCGCGCuGCGUGCgcgagGGUGAg- -3' miRNA: 3'- cuacCGGCGCG-UGUACGaa---CCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 33330 | 0.68 | 0.823577 |
Target: 5'- cGUGGCgGCGCGC-UGCgugacGGUGGg- -3' miRNA: 3'- cUACCGgCGCGUGuACGaa---CCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 109947 | 0.66 | 0.907434 |
Target: 5'- --cGGCCGCGCGCGggGCUcgcUGGc---- -3' miRNA: 3'- cuaCCGGCGCGUGUa-CGA---ACCacuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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