Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6344 | 3' | -54.8 | NC_001847.1 | + | 82671 | 0.69 | 0.738027 |
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Target: 5'- --cGcGCCGCGCuCGUGCU--GUGGUCa -3' miRNA: 3'- cuaC-CGGCGCGuGUACGAacCACUAG- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 133423 | 0.69 | 0.76779 |
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Target: 5'- -cUGGCCGCgGCGCG-GCggcGGcUGAUCg -3' miRNA: 3'- cuACCGGCG-CGUGUaCGaa-CC-ACUAG- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 102515 | 0.69 | 0.777467 |
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Target: 5'- --gGGCagaGCGCGCGccGCgccGGUGAUCg -3' miRNA: 3'- cuaCCGg--CGCGUGUa-CGaa-CCACUAG- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 120653 | 0.68 | 0.805627 |
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Target: 5'- -uUGGCCGCGUuuguacACA-GCUUcGGUGAg- -3' miRNA: 3'- cuACCGGCGCG------UGUaCGAA-CCACUag -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 74099 | 0.68 | 0.809273 |
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Target: 5'- uGAUGGCCGCGUACc-GCUgccgguucccggccgUGGUGcugCg -3' miRNA: 3'- -CUACCGGCGCGUGuaCGA---------------ACCACua-G- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 101767 | 0.68 | 0.81469 |
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Target: 5'- --cGGCCGCcaggagGCGCAgacUGCUgagGGUGAg- -3' miRNA: 3'- cuaCCGGCG------CGUGU---ACGAa--CCACUag -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 69347 | 0.68 | 0.823577 |
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Target: 5'- -cUGGCgGCGCugGUGCUggcgcgcgcGGcGGUCu -3' miRNA: 3'- cuACCGgCGCGugUACGAa--------CCaCUAG- -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 46610 | 0.68 | 0.832278 |
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Target: 5'- --cGGCCucgcgGCGCACGaGCgUGGUGAa- -3' miRNA: 3'- cuaCCGG-----CGCGUGUaCGaACCACUag -5' |
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| 6344 | 3' | -54.8 | NC_001847.1 | + | 6154 | 0.8 | 0.229232 |
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Target: 5'- cGGUGGCggugacggCGCGCAgGUGCUcGGUGAUCu -3' miRNA: 3'- -CUACCG--------GCGCGUgUACGAaCCACUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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