miRNA display CGI


Results 41 - 60 of 388 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 127423 0.72 0.373439
Target:  5'- -cGCCcgcGCCCUGCgCCUgaaugcccaaggCGCGCUCCaGCa -3'
miRNA:   3'- caCGGu--UGGGAUG-GGA------------GCGCGAGG-CG- -5'
6344 5' -59.5 NC_001847.1 + 71720 0.72 0.373439
Target:  5'- -cGCCGGCCCgccgGCgCCgcgUGCGCUCCcguGCg -3'
miRNA:   3'- caCGGUUGGGa---UG-GGa--GCGCGAGG---CG- -5'
6344 5' -59.5 NC_001847.1 + 80501 0.72 0.373439
Target:  5'- -aGCgCGGCgCUGCCgCUCGCGCaacagCCGCu -3'
miRNA:   3'- caCG-GUUGgGAUGG-GAGCGCGa----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 32478 0.72 0.373439
Target:  5'- -cGCCc-CCCcGCCCUCGCGg-CCGCu -3'
miRNA:   3'- caCGGuuGGGaUGGGAGCGCgaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 80572 0.72 0.373439
Target:  5'- -cGcCCAGCCCgcgggGCCgUCGUcCUCCGCg -3'
miRNA:   3'- caC-GGUUGGGa----UGGgAGCGcGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 105674 0.72 0.381536
Target:  5'- -cGCCAgcGCCCagGCCgaCGCGCgggCCGCc -3'
miRNA:   3'- caCGGU--UGGGa-UGGgaGCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 120963 0.72 0.381536
Target:  5'- -cGCCAGCCCcucccgUGCCUUUaGCGCggCCGCc -3'
miRNA:   3'- caCGGUUGGG------AUGGGAG-CGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 2861 0.72 0.381536
Target:  5'- -cGCCAgcGCCCagGCCgaCGCGCgggCCGCc -3'
miRNA:   3'- caCGGU--UGGGa-UGGgaGCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 100884 0.72 0.381536
Target:  5'- -cGCCGcgcGCCgguCUGCgCCUCGCGCcgcgCCGCg -3'
miRNA:   3'- caCGGU---UGG---GAUG-GGAGCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 112984 0.72 0.389748
Target:  5'- -gGCCGGCCCgcugcgccgGCUUUUGCGCgCCGCc -3'
miRNA:   3'- caCGGUUGGGa--------UGGGAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 21738 0.72 0.389748
Target:  5'- -gGCCGGCgCCgGCCCgcgCGCGCgggggggCCGCc -3'
miRNA:   3'- caCGGUUG-GGaUGGGa--GCGCGa------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 10171 0.72 0.389748
Target:  5'- -gGCCGGCCCgcugcgccgGCUUUUGCGCgCCGCc -3'
miRNA:   3'- caCGGUUGGGa--------UGGGAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 133962 0.72 0.389748
Target:  5'- cUGCCGGCCgCggcggugGCCUUCuGCGCggCCGCg -3'
miRNA:   3'- cACGGUUGG-Ga------UGGGAG-CGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 31149 0.72 0.389748
Target:  5'- cUGCCGGCCgCggcggugGCCUUCuGCGCggCCGCg -3'
miRNA:   3'- cACGGUUGG-Ga------UGGGAG-CGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 124551 0.72 0.389748
Target:  5'- -gGCCGGCgCCgGCCCgcgCGCGCgggggggCCGCc -3'
miRNA:   3'- caCGGUUG-GGaUGGGa--GCGCGa------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 81426 0.72 0.390576
Target:  5'- -cGCCGAUCCgcCCCgcgagccgccggcggCGCGCUCgCGCg -3'
miRNA:   3'- caCGGUUGGGauGGGa--------------GCGCGAG-GCG- -5'
6344 5' -59.5 NC_001847.1 + 78941 0.72 0.397238
Target:  5'- cUGCUGGCCCUguGCCCcgcaggcUgGCGCUCgCGCa -3'
miRNA:   3'- cACGGUUGGGA--UGGG-------AgCGCGAG-GCG- -5'
6344 5' -59.5 NC_001847.1 + 121306 0.72 0.398076
Target:  5'- -cGCgCGAgCgUGCCCUCGCGCaCCGUc -3'
miRNA:   3'- caCG-GUUgGgAUGGGAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 28085 0.72 0.398076
Target:  5'- gGUGCUguGGCgCCUGCCCggggccgCGCGCgacaCCGCc -3'
miRNA:   3'- -CACGG--UUG-GGAUGGGa------GCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 43876 0.72 0.398076
Target:  5'- aUGCCGGCCUuccggggcuuUGCCUUCGCcguGCUCaCGCc -3'
miRNA:   3'- cACGGUUGGG----------AUGGGAGCG---CGAG-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.