miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 3863 0.74 0.279091
Target:  5'- -aGCgGGCCCUccagcggcggcgGCCCgUCGCGCggcgCCGCg -3'
miRNA:   3'- caCGgUUGGGA------------UGGG-AGCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 106676 0.74 0.279091
Target:  5'- -aGCgGGCCCUccagcggcggcgGCCCgUCGCGCggcgCCGCg -3'
miRNA:   3'- caCGgUUGGGA------------UGGG-AGCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 13281 0.74 0.285624
Target:  5'- gGUGCCGGCCCUGUgCgCGCGCUaCGCg -3'
miRNA:   3'- -CACGGUUGGGAUGgGaGCGCGAgGCG- -5'
6344 5' -59.5 NC_001847.1 + 73825 0.74 0.285624
Target:  5'- -cGCCcGCCCcGCCC-CGCGCacCCGCg -3'
miRNA:   3'- caCGGuUGGGaUGGGaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 128271 0.74 0.292278
Target:  5'- cUGCUccucggcaaGGCCCUACCCgCGCGCgugCUGCu -3'
miRNA:   3'- cACGG---------UUGGGAUGGGaGCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 129477 0.74 0.292278
Target:  5'- -gGCCGGCCC-ACCUUCGCGC-CUGg -3'
miRNA:   3'- caCGGUUGGGaUGGGAGCGCGaGGCg -5'
6344 5' -59.5 NC_001847.1 + 26664 0.74 0.292278
Target:  5'- -gGCCGGCCC-ACCUUCGCGC-CUGg -3'
miRNA:   3'- caCGGUUGGGaUGGGAGCGCGaGGCg -5'
6344 5' -59.5 NC_001847.1 + 112563 0.74 0.299051
Target:  5'- -gGCgGGCCCUGCCCcgggGCGC-CCGCu -3'
miRNA:   3'- caCGgUUGGGAUGGGag--CGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 9750 0.74 0.299051
Target:  5'- -gGCgGGCCCUGCCCcgggGCGC-CCGCu -3'
miRNA:   3'- caCGgUUGGGAUGGGag--CGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 49110 0.73 0.320099
Target:  5'- -gGCCGGCUUguccUCCUCGCGCUcCCGCc -3'
miRNA:   3'- caCGGUUGGGau--GGGAGCGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 79429 0.73 0.327358
Target:  5'- cGUGCCcGCUCUGucgccCCCUCGCGCcgUuuGCa -3'
miRNA:   3'- -CACGGuUGGGAU-----GGGAGCGCG--AggCG- -5'
6344 5' -59.5 NC_001847.1 + 121077 0.73 0.327358
Target:  5'- cGUGCUggUgCUGCUgcugCUUGCGCUCUGCg -3'
miRNA:   3'- -CACGGuuGgGAUGG----GAGCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 29915 0.73 0.327358
Target:  5'- -cGCCcGCCUgUGCCCgCGCGC-CCGCg -3'
miRNA:   3'- caCGGuUGGG-AUGGGaGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 66164 0.73 0.334737
Target:  5'- cGUGCUcucGGCCgUGCCCgCGCGggCCGCg -3'
miRNA:   3'- -CACGG---UUGGgAUGGGaGCGCgaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 98117 0.73 0.342238
Target:  5'- aGUGCgAGCCCggcGCCC---CGCUCCGCa -3'
miRNA:   3'- -CACGgUUGGGa--UGGGagcGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 123056 0.73 0.349859
Target:  5'- -gGCCGcgggcGCCggACCCgcgGCGCUCCGCg -3'
miRNA:   3'- caCGGU-----UGGgaUGGGag-CGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 76203 0.72 0.365461
Target:  5'- -gGCCGGCuaccccuacgguCCUGCCUUCGCuGCUgCGCa -3'
miRNA:   3'- caCGGUUG------------GGAUGGGAGCG-CGAgGCG- -5'
6344 5' -59.5 NC_001847.1 + 114882 0.72 0.365461
Target:  5'- -cGCCGACCUcGCCgUCuCGCUCuCGCg -3'
miRNA:   3'- caCGGUUGGGaUGGgAGcGCGAG-GCG- -5'
6344 5' -59.5 NC_001847.1 + 83031 0.72 0.365461
Target:  5'- -cGCCGGCCCgcgGCCgCUagUGCGCUugggCCGCg -3'
miRNA:   3'- caCGGUUGGGa--UGG-GA--GCGCGA----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 61420 0.72 0.373439
Target:  5'- -aGCCGGCCCUcgacGCCCgcggcCGCGCcgCCGg -3'
miRNA:   3'- caCGGUUGGGA----UGGGa----GCGCGa-GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.