miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 120963 0.72 0.381536
Target:  5'- -cGCCAGCCCcucccgUGCCUUUaGCGCggCCGCc -3'
miRNA:   3'- caCGGUUGGG------AUGGGAG-CGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 98117 0.73 0.342238
Target:  5'- aGUGCgAGCCCggcGCCC---CGCUCCGCa -3'
miRNA:   3'- -CACGgUUGGGa--UGGGagcGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 13281 0.74 0.285624
Target:  5'- gGUGCCGGCCCUGUgCgCGCGCUaCGCg -3'
miRNA:   3'- -CACGGUUGGGAUGgGaGCGCGAgGCG- -5'
6344 5' -59.5 NC_001847.1 + 19457 0.76 0.225574
Target:  5'- -aGCCGGCUCUcGCCCcCGCGCagCCGCu -3'
miRNA:   3'- caCGGUUGGGA-UGGGaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 15972 0.71 0.415069
Target:  5'- gGUcCCAugCCUGCCC-CGCcGCcCCGCg -3'
miRNA:   3'- -CAcGGUugGGAUGGGaGCG-CGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 81426 0.72 0.390576
Target:  5'- -cGCCGAUCCgcCCCgcgagccgccggcggCGCGCUCgCGCg -3'
miRNA:   3'- caCGGUUGGGauGGGa--------------GCGCGAG-GCG- -5'
6344 5' -59.5 NC_001847.1 + 79429 0.73 0.327358
Target:  5'- cGUGCCcGCUCUGucgccCCCUCGCGCcgUuuGCa -3'
miRNA:   3'- -CACGGuUGGGAU-----GGGAGCGCG--AggCG- -5'
6344 5' -59.5 NC_001847.1 + 106024 0.76 0.220197
Target:  5'- -cGCCAGCUCgcgcaGCCgCUCGCGCgCCGCc -3'
miRNA:   3'- caCGGUUGGGa----UGG-GAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 133962 0.72 0.389748
Target:  5'- cUGCCGGCCgCggcggugGCCUUCuGCGCggCCGCg -3'
miRNA:   3'- cACGGUUGG-Ga------UGGGAG-CGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 24455 0.76 0.209771
Target:  5'- -cGCC-GCCCUcACCCUCGCGCa-CGCa -3'
miRNA:   3'- caCGGuUGGGA-UGGGAGCGCGagGCG- -5'
6344 5' -59.5 NC_001847.1 + 66164 0.73 0.334737
Target:  5'- cGUGCUcucGGCCgUGCCCgCGCGggCCGCg -3'
miRNA:   3'- -CACGG---UUGGgAUGGGaGCGCgaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 105674 0.72 0.381536
Target:  5'- -cGCCAgcGCCCagGCCgaCGCGCgggCCGCc -3'
miRNA:   3'- caCGGU--UGGGa-UGGgaGCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 49110 0.73 0.320099
Target:  5'- -gGCCGGCUUguccUCCUCGCGCUcCCGCc -3'
miRNA:   3'- caCGGUUGGGau--GGGAGCGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 73825 0.74 0.285624
Target:  5'- -cGCCcGCCCcGCCC-CGCGCacCCGCg -3'
miRNA:   3'- caCGGuUGGGaUGGGaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 91496 0.75 0.266382
Target:  5'- -gGCC-ACCCgaGCCCUCGCGCgcgucCUGCa -3'
miRNA:   3'- caCGGuUGGGa-UGGGAGCGCGa----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 1541 0.75 0.242375
Target:  5'- uGUGCCGcccaaGCCCgcccGCCCgauagCGCGC-CCGCg -3'
miRNA:   3'- -CACGGU-----UGGGa---UGGGa----GCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 103400 0.71 0.441373
Target:  5'- -cGCCGGguCCUgGCCCUCcgcggcCGCUCCGCa -3'
miRNA:   3'- caCGGUU--GGGaUGGGAGc-----GCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 112510 0.71 0.415069
Target:  5'- -aGCCcGCCCUcCCCggaCGCGCcCUGCg -3'
miRNA:   3'- caCGGuUGGGAuGGGa--GCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 24696 0.72 0.406516
Target:  5'- --cUCGACgCCUAgcCCCUCGCGCUCCa- -3'
miRNA:   3'- cacGGUUG-GGAU--GGGAGCGCGAGGcg -5'
6344 5' -59.5 NC_001847.1 + 78941 0.72 0.397238
Target:  5'- cUGCUGGCCCUguGCCCcgcaggcUgGCGCUCgCGCa -3'
miRNA:   3'- cACGGUUGGGA--UGGG-------AgCGCGAG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.