miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 4215 0.67 0.675333
Target:  5'- -aGCCAaaGCCCUGCgCggugccggCGCGCgCCGg -3'
miRNA:   3'- caCGGU--UGGGAUGgGa-------GCGCGaGGCg -5'
6344 5' -59.5 NC_001847.1 + 4296 0.7 0.506178
Target:  5'- -cGCCGGCgCCUugguaCUCGCGCgCCGCc -3'
miRNA:   3'- caCGGUUG-GGAugg--GAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 4527 0.68 0.624964
Target:  5'- -gGCCucggcGCCCUcggugGCCCcCGCGuCUCCGg -3'
miRNA:   3'- caCGGu----UGGGA-----UGGGaGCGC-GAGGCg -5'
6344 5' -59.5 NC_001847.1 + 4617 0.7 0.515777
Target:  5'- -gGCCAGCUCggcgcgggcgGCCCgccgGCGCUCgCGCg -3'
miRNA:   3'- caCGGUUGGGa---------UGGGag--CGCGAG-GCG- -5'
6344 5' -59.5 NC_001847.1 + 4930 0.66 0.734539
Target:  5'- -cGCCGcgcuuCCCgcGCCCUC-CGCgCCGCc -3'
miRNA:   3'- caCGGUu----GGGa-UGGGAGcGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 5812 0.68 0.614875
Target:  5'- -gGCCGaacGCCCccgGCCC-CGCGC-CCGg -3'
miRNA:   3'- caCGGU---UGGGa--UGGGaGCGCGaGGCg -5'
6344 5' -59.5 NC_001847.1 + 5856 0.68 0.604798
Target:  5'- -aGCC-GCCUgGCCCUCgaggugguccaGCGCUgCGCg -3'
miRNA:   3'- caCGGuUGGGaUGGGAG-----------CGCGAgGCG- -5'
6344 5' -59.5 NC_001847.1 + 6416 0.67 0.695297
Target:  5'- -gGCCAccACCCcccuccCCCUCGCaCcCCGCa -3'
miRNA:   3'- caCGGU--UGGGau----GGGAGCGcGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 6921 0.68 0.594742
Target:  5'- uUGCaUAGCCCccugGCCCgcaGUGCUuCCGCg -3'
miRNA:   3'- cACG-GUUGGGa---UGGGag-CGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 7131 0.66 0.724836
Target:  5'- uUGCCggUCUUGCCCccuccccuUCGgGCgugUCGCg -3'
miRNA:   3'- cACGGuuGGGAUGGG--------AGCgCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 7781 0.66 0.724836
Target:  5'- gGUGCCGagGCUCggGCCC-CGCcGCcccugCCGCg -3'
miRNA:   3'- -CACGGU--UGGGa-UGGGaGCG-CGa----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 7928 0.69 0.564759
Target:  5'- -gGaaGACCCU-CCCgCGCGCgCCGCg -3'
miRNA:   3'- caCggUUGGGAuGGGaGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 8026 0.66 0.705206
Target:  5'- uGUGCuuuguuuuaCAGCCCgguggACCCaaagcCGCGCggcCCGCg -3'
miRNA:   3'- -CACG---------GUUGGGa----UGGGa----GCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 8215 0.66 0.734539
Target:  5'- cGUGCCAGCagaagcagCUGCgCCaCGCGCUggcCUGCg -3'
miRNA:   3'- -CACGGUUGg-------GAUG-GGaGCGCGA---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 8226 0.66 0.753676
Target:  5'- aGUGCgAGCCCUgggACCCgCGCcaGCUCUc- -3'
miRNA:   3'- -CACGgUUGGGA---UGGGaGCG--CGAGGcg -5'
6344 5' -59.5 NC_001847.1 + 9021 0.67 0.684338
Target:  5'- -aGCUcacucggGACCCcACCCgagcuccUGUGCUCCGCc -3'
miRNA:   3'- caCGG-------UUGGGaUGGGa------GCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 9569 0.66 0.734539
Target:  5'- -cGuCCAGCCCgccGCCCgcggcCGCGaucgagCCGCa -3'
miRNA:   3'- caC-GGUUGGGa--UGGGa----GCGCga----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 9640 0.7 0.468597
Target:  5'- -cGCCGGCCCgccgcucgAgcagccgggcgUCCUCGCGCccgCCGCg -3'
miRNA:   3'- caCGGUUGGGa-------U-----------GGGAGCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 9697 0.71 0.415069
Target:  5'- -aGCCcGCCCUcCCCggaCGCGCcCUGCg -3'
miRNA:   3'- caCGGuUGGGAuGGGa--GCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 9750 0.74 0.299051
Target:  5'- -gGCgGGCCCUGCCCcgggGCGC-CCGCu -3'
miRNA:   3'- caCGgUUGGGAUGGGag--CGCGaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.