miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 129477 0.74 0.292278
Target:  5'- -gGCCGGCCC-ACCUUCGCGC-CUGg -3'
miRNA:   3'- caCGGUUGGGaUGGGAGCGCGaGGCg -5'
6344 5' -59.5 NC_001847.1 + 129360 0.72 0.406516
Target:  5'- gGUGCCgGGCCCgggGCUagacgcCGCGCUUCGCg -3'
miRNA:   3'- -CACGG-UUGGGa--UGGga----GCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 129041 0.69 0.574716
Target:  5'- -cGCCGcGCCUcgcggGCgUCUCGCGCcUCCGCg -3'
miRNA:   3'- caCGGU-UGGGa----UG-GGAGCGCG-AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 128447 0.68 0.604798
Target:  5'- -cGCuCGGCCCUGCgCgCGCGC-CCGg -3'
miRNA:   3'- caCG-GUUGGGAUGgGaGCGCGaGGCg -5'
6344 5' -59.5 NC_001847.1 + 128271 0.74 0.292278
Target:  5'- cUGCUccucggcaaGGCCCUACCCgCGCGCgugCUGCu -3'
miRNA:   3'- cACGG---------UUGGGAUGGGaGCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 127423 0.72 0.373439
Target:  5'- -cGCCcgcGCCCUGCgCCUgaaugcccaaggCGCGCUCCaGCa -3'
miRNA:   3'- caCGGu--UGGGAUG-GGA------------GCGCGAGG-CG- -5'
6344 5' -59.5 NC_001847.1 + 127061 0.68 0.604798
Target:  5'- -cGCCGAUCUcgccgcggcggUGCCCcccucugCGCGCgggCCGCg -3'
miRNA:   3'- caCGGUUGGG-----------AUGGGa------GCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 126987 0.76 0.209771
Target:  5'- -cGCgAGCCCUucccaacuaGCCCUCGCGCagcaCCGCc -3'
miRNA:   3'- caCGgUUGGGA---------UGGGAGCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 125046 0.69 0.554848
Target:  5'- -gGCUuuCCCcGCCgCUUGUGCUcCCGCg -3'
miRNA:   3'- caCGGuuGGGaUGG-GAGCGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 124983 0.69 0.561781
Target:  5'- -aGCCGcgcgcgucgaaaaaGCCCUcCCgCUCGCGCUacggccgggcCCGCu -3'
miRNA:   3'- caCGGU--------------UGGGAuGG-GAGCGCGA----------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 124551 0.72 0.389748
Target:  5'- -gGCCGGCgCCgGCCCgcgCGCGCgggggggCCGCc -3'
miRNA:   3'- caCGGUUG-GGaUGGGa--GCGCGa------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 124256 0.66 0.724836
Target:  5'- -gGCCAAagcuccggcuccCCCUuccCCCUCcCGCcCCGCg -3'
miRNA:   3'- caCGGUU------------GGGAu--GGGAGcGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 124224 0.66 0.724836
Target:  5'- -aGCCGGCUCg--CCUCGCGgUaguaCCGCg -3'
miRNA:   3'- caCGGUUGGGaugGGAGCGCgA----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 123263 0.67 0.695297
Target:  5'- cGUGUaGACCCaaguggcuuuuaUACgCUCGCGCcgcCCGCa -3'
miRNA:   3'- -CACGgUUGGG------------AUGgGAGCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 123056 0.73 0.349859
Target:  5'- -gGCCGcgggcGCCggACCCgcgGCGCUCCGCg -3'
miRNA:   3'- caCGGU-----UGGgaUGGGag-CGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 122712 0.68 0.635058
Target:  5'- uGUGCCGGCgCCUuggaGCCCgcacucaaaUCGCGCgggggaacugCUGCg -3'
miRNA:   3'- -CACGGUUG-GGA----UGGG---------AGCGCGa---------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 122532 0.69 0.544989
Target:  5'- aGUGCCGcccggACCCUGCCggUCGCuggCCGCa -3'
miRNA:   3'- -CACGGU-----UGGGAUGGg-AGCGcgaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 122452 0.66 0.744155
Target:  5'- cUGCCugcACCCcGCCgaCGCGCagUGCa -3'
miRNA:   3'- cACGGu--UGGGaUGGgaGCGCGagGCG- -5'
6344 5' -59.5 NC_001847.1 + 122318 0.66 0.724836
Target:  5'- -gGCCAucuCCCaagcgcGCCgCUCGCGCgccaCGCg -3'
miRNA:   3'- caCGGUu--GGGa-----UGG-GAGCGCGag--GCG- -5'
6344 5' -59.5 NC_001847.1 + 122180 0.68 0.594742
Target:  5'- -cGCCAuggCCUGCUUcaUCGCGCgCCGCc -3'
miRNA:   3'- caCGGUug-GGAUGGG--AGCGCGaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.