miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 135074 0.69 0.534211
Target:  5'- -aGCgGGCCCggGCCCgcCGCGCcgaaauuUCCGCc -3'
miRNA:   3'- caCGgUUGGGa-UGGGa-GCGCG-------AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 135046 1.11 0.000826
Target:  5'- uGUGCCAACCCUACCCUCGCGCUCCGCg -3'
miRNA:   3'- -CACGGUUGGGAUGGGAGCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 134733 0.66 0.738396
Target:  5'- -cGCCcGCCCcggGCCCUCggucucggucggagcGCGgUCCGg -3'
miRNA:   3'- caCGGuUGGGa--UGGGAG---------------CGCgAGGCg -5'
6344 5' -59.5 NC_001847.1 + 134395 0.69 0.564759
Target:  5'- -gGCCGGCCUcGCCCUagggGgGC-CCGCg -3'
miRNA:   3'- caCGGUUGGGaUGGGAg---CgCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 133962 0.72 0.389748
Target:  5'- cUGCCGGCCgCggcggugGCCUUCuGCGCggCCGCg -3'
miRNA:   3'- cACGGUUGG-Ga------UGGGAG-CGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 133877 0.68 0.635058
Target:  5'- -cGCCAACCgCUggggGCUCggCGCGCcgCUGCg -3'
miRNA:   3'- caCGGUUGG-GA----UGGGa-GCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 133647 0.69 0.544989
Target:  5'- -cGCgCGGCUCUACCCcgagGCGCcgCCGCu -3'
miRNA:   3'- caCG-GUUGGGAUGGGag--CGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 133609 0.68 0.624964
Target:  5'- --uUCGGCCCgggcGCCUUCGCGCgcgccgaggCCGCc -3'
miRNA:   3'- cacGGUUGGGa---UGGGAGCGCGa--------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 133182 0.68 0.623954
Target:  5'- -cGCgGGCgcgggCUGCCCUCGCuggaggaGCUCUGCg -3'
miRNA:   3'- caCGgUUGg----GAUGGGAGCG-------CGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 132818 0.66 0.734539
Target:  5'- -aGCC-GCCgCUGCCCgcccgCGUGCUggggcccaugCCGCc -3'
miRNA:   3'- caCGGuUGG-GAUGGGa----GCGCGA----------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 132407 0.7 0.477862
Target:  5'- -cGCUcGCuCCcGCCCU-GCGCUCCGUg -3'
miRNA:   3'- caCGGuUG-GGaUGGGAgCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 132056 0.67 0.695297
Target:  5'- cUGCCGGCCgCgGCCUgCGCGCcggaCGCg -3'
miRNA:   3'- cACGGUUGG-GaUGGGaGCGCGag--GCG- -5'
6344 5' -59.5 NC_001847.1 + 131304 0.67 0.68234
Target:  5'- cUGCUGACgCCUucuggcgaggcgugGCCCggcagCGCGCcgCCGCc -3'
miRNA:   3'- cACGGUUG-GGA--------------UGGGa----GCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 131216 0.66 0.744155
Target:  5'- -cGCCGcCCgCUGCCagcgcugugCGUGCgUCCGCg -3'
miRNA:   3'- caCGGUuGG-GAUGGga-------GCGCG-AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 131141 0.68 0.624964
Target:  5'- -cGCCgGGCCCggcGCCC-CGCGgggCCGCg -3'
miRNA:   3'- caCGG-UUGGGa--UGGGaGCGCga-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 130712 0.67 0.655231
Target:  5'- cGUGCgCGuuuCCCUGCggcgCGCGCUgCCGCc -3'
miRNA:   3'- -CACG-GUu--GGGAUGgga-GCGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 130116 0.69 0.544989
Target:  5'- -cGCCGgucGCCCgagcuucCCCUcCGCGCcgCCGCc -3'
miRNA:   3'- caCGGU---UGGGau-----GGGA-GCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 129908 0.66 0.705206
Target:  5'- -gGCaAACCCuUugCCgcgCGCGCcCCGCc -3'
miRNA:   3'- caCGgUUGGG-AugGGa--GCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 129837 0.76 0.209771
Target:  5'- cUGCCAggACCCUcGCCgUCGCGCUcgCCGUa -3'
miRNA:   3'- cACGGU--UGGGA-UGGgAGCGCGA--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 129780 0.66 0.753676
Target:  5'- -cGCCGgaGCCUggGCCCggcCGCGC-CgCGCg -3'
miRNA:   3'- caCGGU--UGGGa-UGGGa--GCGCGaG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.