miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 76 0.71 0.432499
Target:  5'- -gGCgGGCCCggGCCCgcucUGgGCUCCGCc -3'
miRNA:   3'- caCGgUUGGGa-UGGGa---GCgCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 227 0.69 0.564759
Target:  5'- -gGCCcgAGCCCgGgCCUCGCGCcCCGa -3'
miRNA:   3'- caCGG--UUGGGaUgGGAGCGCGaGGCg -5'
6344 5' -59.5 NC_001847.1 + 303 0.68 0.624964
Target:  5'- -cGCCGuCCCcgcGCCCcgccggagcuUCGCGCUCCa- -3'
miRNA:   3'- caCGGUuGGGa--UGGG----------AGCGCGAGGcg -5'
6344 5' -59.5 NC_001847.1 + 363 0.72 0.406516
Target:  5'- -cGCCccggGGCCC-GCCC-CGCGCgCCGCg -3'
miRNA:   3'- caCGG----UUGGGaUGGGaGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 587 0.71 0.441373
Target:  5'- -cGCCGGguCCUgGCCCUCcgcggcCGCUCCGCa -3'
miRNA:   3'- caCGGUU--GGGaUGGGAGc-----GCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 590 0.66 0.724836
Target:  5'- -gGCCGucuuugugUCCUGCCCgacgaCGCGCcCCGUg -3'
miRNA:   3'- caCGGUu-------GGGAUGGGa----GCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 937 0.75 0.260206
Target:  5'- -cGCC-GCCCUcgGCCCgCGCGCgCCGCu -3'
miRNA:   3'- caCGGuUGGGA--UGGGaGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 1344 0.7 0.515777
Target:  5'- -cGCCGcGCCCUGCgcggccauguCCUUGCGC-CCGUc -3'
miRNA:   3'- caCGGU-UGGGAUG----------GGAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 1541 0.75 0.242375
Target:  5'- uGUGCCGcccaaGCCCgcccGCCCgauagCGCGC-CCGCg -3'
miRNA:   3'- -CACGGU-----UGGGa---UGGGa----GCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 2861 0.72 0.381536
Target:  5'- -cGCCAgcGCCCagGCCgaCGCGCgggCCGCc -3'
miRNA:   3'- caCGGU--UGGGa-UGGgaGCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 2990 0.66 0.744155
Target:  5'- -gGCCGGCgCUggaGCCgCgCGCGCUCCa- -3'
miRNA:   3'- caCGGUUGgGA---UGG-GaGCGCGAGGcg -5'
6344 5' -59.5 NC_001847.1 + 3033 0.69 0.564759
Target:  5'- -cGCCGagcaGCUCggcgGCCCggagcaCGCGCUCCGg -3'
miRNA:   3'- caCGGU----UGGGa---UGGGa-----GCGCGAGGCg -5'
6344 5' -59.5 NC_001847.1 + 3211 0.76 0.220197
Target:  5'- -cGCCAGCUCgcgcaGCCgCUCGCGCgCCGCc -3'
miRNA:   3'- caCGGUUGGGa----UGG-GAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 3213 0.68 0.594742
Target:  5'- -cGCCGGCgCacgUGCCUcCGCGCcgCCGCg -3'
miRNA:   3'- caCGGUUGgG---AUGGGaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 3350 0.68 0.594742
Target:  5'- aUGCCGACgCUGCCggcCGCcGCaaUCCGCg -3'
miRNA:   3'- cACGGUUGgGAUGGga-GCG-CG--AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 3545 0.66 0.734539
Target:  5'- -cGgCAGCCCUGCa--CGCGCcgCUGCa -3'
miRNA:   3'- caCgGUUGGGAUGggaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 3577 0.75 0.272042
Target:  5'- -cGCCAgcugcagguccggGCCCgcgAgCUUCGCGCUCUGCa -3'
miRNA:   3'- caCGGU-------------UGGGa--UgGGAGCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 3863 0.74 0.279091
Target:  5'- -aGCgGGCCCUccagcggcggcgGCCCgUCGCGCggcgCCGCg -3'
miRNA:   3'- caCGgUUGGGA------------UGGG-AGCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 3909 0.67 0.665295
Target:  5'- -aGCCAGCgCggGCgCCgguugCGCGC-CCGCg -3'
miRNA:   3'- caCGGUUGgGa-UG-GGa----GCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 4013 0.66 0.715056
Target:  5'- -cGCCGggcccggcGCCCgcCUCUCGCGgggCCGCu -3'
miRNA:   3'- caCGGU--------UGGGauGGGAGCGCga-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.