miRNA display CGI


Results 41 - 60 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 104117 0.66 0.734539
Target:  5'- -gGCCGGCgUUGCCggCGCGCg-CGCg -3'
miRNA:   3'- caCGGUUGgGAUGGgaGCGCGagGCG- -5'
6344 5' -59.5 NC_001847.1 + 100298 0.66 0.734539
Target:  5'- cUGCCGucGCCCgcugcGCgCUCGC-CUCCaGCg -3'
miRNA:   3'- cACGGU--UGGGa----UGgGAGCGcGAGG-CG- -5'
6344 5' -59.5 NC_001847.1 + 98168 0.66 0.734539
Target:  5'- -cGCgGGCCCgcucgccgGCgCC-CGCGCUggCCGCa -3'
miRNA:   3'- caCGgUUGGGa-------UG-GGaGCGCGA--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 80059 0.66 0.734539
Target:  5'- -cGCCcACCCgcCCCcCGCGg-CCGCc -3'
miRNA:   3'- caCGGuUGGGauGGGaGCGCgaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 61271 0.66 0.734539
Target:  5'- -cGCCGGCggaaCUgacgcGCCC-CGCGCaCCGCg -3'
miRNA:   3'- caCGGUUGg---GA-----UGGGaGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 30005 0.66 0.734539
Target:  5'- -aGCC-GCCgCUGCCCgcccgCGUGCUggggcccaugCCGCc -3'
miRNA:   3'- caCGGuUGG-GAUGGGa----GCGCGA----------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 10610 0.66 0.734539
Target:  5'- -cGCCGGCCCgcGCCCUgcugGCGCugguccUCCGg -3'
miRNA:   3'- caCGGUUGGGa-UGGGAg---CGCG------AGGCg -5'
6344 5' -59.5 NC_001847.1 + 73939 0.66 0.734539
Target:  5'- -aGCCGGCgCgUACCUggCGCGCg-CGCa -3'
miRNA:   3'- caCGGUUG-GgAUGGGa-GCGCGagGCG- -5'
6344 5' -59.5 NC_001847.1 + 47741 0.66 0.734539
Target:  5'- -gGCgGgGCCCcGCCCgCGCGCaaguacuugUCCGCg -3'
miRNA:   3'- caCGgU-UGGGaUGGGaGCGCG---------AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 3545 0.66 0.734539
Target:  5'- -cGgCAGCCCUGCa--CGCGCcgCUGCa -3'
miRNA:   3'- caCgGUUGGGAUGggaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 78824 0.66 0.734539
Target:  5'- -cGCCuuuacGGCCUUcgcgGCCCgcCGCGCgacgCCGCa -3'
miRNA:   3'- caCGG-----UUGGGA----UGGGa-GCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 106358 0.66 0.734539
Target:  5'- -cGgCAGCCCUGCa--CGCGCcgCUGCa -3'
miRNA:   3'- caCgGUUGGGAUGggaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 46101 0.66 0.734539
Target:  5'- -cGCCAugCCgucGCCCagCGCGCacaCgGCg -3'
miRNA:   3'- caCGGUugGGa--UGGGa-GCGCGa--GgCG- -5'
6344 5' -59.5 NC_001847.1 + 10398 0.66 0.734539
Target:  5'- -gGCCGcuuuaugacgGCCCgucCCCcgcgcgguUCGCGCUgCCGCc -3'
miRNA:   3'- caCGGU----------UGGGau-GGG--------AGCGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 93625 0.66 0.733572
Target:  5'- -gGCauaGACCCacgGCCCuuUCGCGCcaugaugUCCGUg -3'
miRNA:   3'- caCGg--UUGGGa--UGGG--AGCGCG-------AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 25927 0.66 0.733572
Target:  5'- -cGCCGACCCgccggcgcuugguUGCCCgaUCGCaC-CCGCc -3'
miRNA:   3'- caCGGUUGGG-------------AUGGG--AGCGcGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 75124 0.66 0.733572
Target:  5'- -gGCCGacggcacGCUCUuuGCCCacgUCGCGCUgUGCg -3'
miRNA:   3'- caCGGU-------UGGGA--UGGG---AGCGCGAgGCG- -5'
6344 5' -59.5 NC_001847.1 + 102119 0.66 0.733572
Target:  5'- -cGCCGcguccgcGCCUcGCCC-CGCGCgccccccggCCGCu -3'
miRNA:   3'- caCGGU-------UGGGaUGGGaGCGCGa--------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 115700 0.66 0.72581
Target:  5'- -gGCUGGCCCggcagcgggcgcgcgGCCUUUgGCGCUcCCGCu -3'
miRNA:   3'- caCGGUUGGGa--------------UGGGAG-CGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 35675 0.66 0.724836
Target:  5'- -cGCUGAUCUUGgcCCCgagcggCGCGCUgCGCa -3'
miRNA:   3'- caCGGUUGGGAU--GGGa-----GCGCGAgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.