miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 132947 1.08 0.001564
Target:  5'- cAUGUUUGAGGUGCGCCCGCACGCCGCc -3'
miRNA:   3'- -UACAAACUCCACGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 79083 0.8 0.151524
Target:  5'- -cGUgcGAcGUGUGCCCGUGCGCCGCg -3'
miRNA:   3'- uaCAaaCUcCACGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 60827 0.78 0.190347
Target:  5'- gAUGgcgcGAGGgGCGCCCGCGgCGCUGCg -3'
miRNA:   3'- -UACaaa-CUCCaCGCGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 57242 0.78 0.195163
Target:  5'- -----aGAGGUGCGCcaCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCCACGCG--GGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 65853 0.77 0.226343
Target:  5'- -------cGGUcCGCCCGCACGCCGCg -3'
miRNA:   3'- uacaaacuCCAcGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 27435 0.77 0.226343
Target:  5'- -----cGGGGUGCccGCCCGCgaGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCACG--CGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 101793 0.76 0.261643
Target:  5'- -aGggUGAGGUGCgagggGCCCaccgucacgcaGCGCGCCGCc -3'
miRNA:   3'- uaCaaACUCCACG-----CGGG-----------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 9610 0.75 0.308339
Target:  5'- -----cGGGGacgaccguagcUGCGCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCC-----------ACGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 134519 0.75 0.301296
Target:  5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3'
miRNA:   3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 51539 0.75 0.280915
Target:  5'- cAUGUcgGAGGcUGCGCgCGCGCGCgUGCu -3'
miRNA:   3'- -UACAaaCUCC-ACGCGgGCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 68453 0.75 0.301296
Target:  5'- -----aGAGGUccGCGCCCGCGgccggggcccCGCCGCg -3'
miRNA:   3'- uacaaaCUCCA--CGCGGGCGU----------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 31706 0.75 0.301296
Target:  5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3'
miRNA:   3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 46751 0.74 0.330218
Target:  5'- -----cGAcGGcGCGCCCGCcCGCCGCg -3'
miRNA:   3'- uacaaaCU-CCaCGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 122568 0.74 0.337761
Target:  5'- -aGUgcGAGG-GCGCCgCGUACGCgGCg -3'
miRNA:   3'- uaCAaaCUCCaCGCGG-GCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 4178 0.74 0.3228
Target:  5'- uUGUUUuGGGccgcGCGCCCGUggGCCGCg -3'
miRNA:   3'- uACAAAcUCCa---CGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 66650 0.74 0.325752
Target:  5'- -cGUUUGuGGacugccuggcgcgcuUGCGCCCGCGCggcggggccccgGCCGCg -3'
miRNA:   3'- uaCAAACuCC---------------ACGCGGGCGUG------------CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3359 0.74 0.35322
Target:  5'- ----aUGGGG-GCGUaCGCGCGCCGCa -3'
miRNA:   3'- uacaaACUCCaCGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 59895 0.74 0.3228
Target:  5'- -cGUUggcgagGAGGgcgGCGCgCGCGCGCgGCg -3'
miRNA:   3'- uaCAAa-----CUCCa--CGCGgGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 15276 0.74 0.315507
Target:  5'- cAUGgccuuugUGGGGUaCGCCUGCugGCUGCg -3'
miRNA:   3'- -UACaa-----ACUCCAcGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 57886 0.74 0.334729
Target:  5'- -----cGAGGgugucgcccgccaGCGCCCGCGCGaCCGCg -3'
miRNA:   3'- uacaaaCUCCa------------CGCGGGCGUGC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.