miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 368 0.72 0.41116
Target:  5'- -----cGGGGcccGC-CCCGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGcGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 1569 0.67 0.69322
Target:  5'- -----cGAGGccagcacggcgcGCGCCaGCGCGCCGCu -3'
miRNA:   3'- uacaaaCUCCa-----------CGCGGgCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 1966 0.7 0.513034
Target:  5'- -----cGAGG-GCaGCCCGCGC-CCGCg -3'
miRNA:   3'- uacaaaCUCCaCG-CGGGCGUGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 2147 0.65 0.798304
Target:  5'- -gGUUUGcgcugcgcagcaccAGGUcucgcaGCGCCCGCGcCGCCuggGCg -3'
miRNA:   3'- uaCAAAC--------------UCCA------CGCGGGCGU-GCGG---CG- -5'
6345 5' -58.2 NC_001847.1 + 2575 0.68 0.685124
Target:  5'- -----cGcGG-GCGCCUGCGCGgCCGCc -3'
miRNA:   3'- uacaaaCuCCaCGCGGGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 3067 0.65 0.798304
Target:  5'- ------cGGGUGCGCCgccagcgcguccggCGCGCagGCCGCg -3'
miRNA:   3'- uacaaacUCCACGCGG--------------GCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3339 0.67 0.732136
Target:  5'- -----aGGGGUGCguuaugccgacgcuGCCgGC-CGCCGCa -3'
miRNA:   3'- uacaaaCUCCACG--------------CGGgCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3359 0.74 0.35322
Target:  5'- ----aUGGGG-GCGUaCGCGCGCCGCa -3'
miRNA:   3'- uacaaACUCCaCGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3779 0.7 0.5627
Target:  5'- ------cGGGUGuCGCCCGCGcCGCCGa -3'
miRNA:   3'- uacaaacUCCAC-GCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 3924 0.7 0.552646
Target:  5'- -------cGGUugcGCGCCCGCgcugGCGCCGCg -3'
miRNA:   3'- uacaaacuCCA---CGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3975 0.71 0.465262
Target:  5'- -----cGAGGUGgGCCgugaGCACGCCaGCg -3'
miRNA:   3'- uacaaaCUCCACgCGGg---CGUGCGG-CG- -5'
6345 5' -58.2 NC_001847.1 + 4178 0.74 0.3228
Target:  5'- uUGUUUuGGGccgcGCGCCCGUggGCCGCg -3'
miRNA:   3'- uACAAAcUCCa---CGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 4287 0.68 0.630984
Target:  5'- -----cGAGGcgcGCGCCggcgccuugguacuCGCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCa--CGCGG--------------GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 4985 0.66 0.754502
Target:  5'- ----cUGGGGUGCGgCgGC-CGCgGCa -3'
miRNA:   3'- uacaaACUCCACGCgGgCGuGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 6313 0.68 0.668851
Target:  5'- --uUUUGGuGGUuggcccuuuuugugcGCGCCUGCGCGcCCGCc -3'
miRNA:   3'- uacAAACU-CCA---------------CGCGGGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 6962 0.67 0.725233
Target:  5'- -----cGGGGUcGCggcggcgcuuccGCCCGCGgGCCGCc -3'
miRNA:   3'- uacaaaCUCCA-CG------------CGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 9610 0.75 0.308339
Target:  5'- -----cGGGGacgaccguagcUGCGCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCC-----------ACGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 10388 0.71 0.503309
Target:  5'- -------cGGUGcCGCCCGCGaGCCGCg -3'
miRNA:   3'- uacaaacuCCAC-GCGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 10693 0.66 0.773488
Target:  5'- -------cGGUcGCGCCCGgGCGCgGCc -3'
miRNA:   3'- uacaaacuCCA-CGCGGGCgUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 11551 0.67 0.705302
Target:  5'- -cGUcUGGaGUGCGCCCaGCGggugcggcUGCCGCg -3'
miRNA:   3'- uaCAaACUcCACGCGGG-CGU--------GCGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.