Results 1 - 20 of 273 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 368 | 0.72 | 0.41116 |
Target: 5'- -----cGGGGcccGC-CCCGCGCGCCGCg -3' miRNA: 3'- uacaaaCUCCa--CGcGGGCGUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 1569 | 0.67 | 0.69322 |
Target: 5'- -----cGAGGccagcacggcgcGCGCCaGCGCGCCGCu -3' miRNA: 3'- uacaaaCUCCa-----------CGCGGgCGUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 1966 | 0.7 | 0.513034 |
Target: 5'- -----cGAGG-GCaGCCCGCGC-CCGCg -3' miRNA: 3'- uacaaaCUCCaCG-CGGGCGUGcGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 2147 | 0.65 | 0.798304 |
Target: 5'- -gGUUUGcgcugcgcagcaccAGGUcucgcaGCGCCCGCGcCGCCuggGCg -3' miRNA: 3'- uaCAAAC--------------UCCA------CGCGGGCGU-GCGG---CG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 2575 | 0.68 | 0.685124 |
Target: 5'- -----cGcGG-GCGCCUGCGCGgCCGCc -3' miRNA: 3'- uacaaaCuCCaCGCGGGCGUGC-GGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 3067 | 0.65 | 0.798304 |
Target: 5'- ------cGGGUGCGCCgccagcgcguccggCGCGCagGCCGCg -3' miRNA: 3'- uacaaacUCCACGCGG--------------GCGUG--CGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 3339 | 0.67 | 0.732136 |
Target: 5'- -----aGGGGUGCguuaugccgacgcuGCCgGC-CGCCGCa -3' miRNA: 3'- uacaaaCUCCACG--------------CGGgCGuGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 3359 | 0.74 | 0.35322 |
Target: 5'- ----aUGGGG-GCGUaCGCGCGCCGCa -3' miRNA: 3'- uacaaACUCCaCGCGgGCGUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 3779 | 0.7 | 0.5627 |
Target: 5'- ------cGGGUGuCGCCCGCGcCGCCGa -3' miRNA: 3'- uacaaacUCCAC-GCGGGCGU-GCGGCg -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 3924 | 0.7 | 0.552646 |
Target: 5'- -------cGGUugcGCGCCCGCgcugGCGCCGCg -3' miRNA: 3'- uacaaacuCCA---CGCGGGCG----UGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 3975 | 0.71 | 0.465262 |
Target: 5'- -----cGAGGUGgGCCgugaGCACGCCaGCg -3' miRNA: 3'- uacaaaCUCCACgCGGg---CGUGCGG-CG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 4178 | 0.74 | 0.3228 |
Target: 5'- uUGUUUuGGGccgcGCGCCCGUggGCCGCg -3' miRNA: 3'- uACAAAcUCCa---CGCGGGCGugCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 4287 | 0.68 | 0.630984 |
Target: 5'- -----cGAGGcgcGCGCCggcgccuugguacuCGCGCGCCGCc -3' miRNA: 3'- uacaaaCUCCa--CGCGG--------------GCGUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 4985 | 0.66 | 0.754502 |
Target: 5'- ----cUGGGGUGCGgCgGC-CGCgGCa -3' miRNA: 3'- uacaaACUCCACGCgGgCGuGCGgCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 6313 | 0.68 | 0.668851 |
Target: 5'- --uUUUGGuGGUuggcccuuuuugugcGCGCCUGCGCGcCCGCc -3' miRNA: 3'- uacAAACU-CCA---------------CGCGGGCGUGC-GGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 6962 | 0.67 | 0.725233 |
Target: 5'- -----cGGGGUcGCggcggcgcuuccGCCCGCGgGCCGCc -3' miRNA: 3'- uacaaaCUCCA-CG------------CGGGCGUgCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 9610 | 0.75 | 0.308339 |
Target: 5'- -----cGGGGacgaccguagcUGCGCCCGC-CGCCGCg -3' miRNA: 3'- uacaaaCUCC-----------ACGCGGGCGuGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 10388 | 0.71 | 0.503309 |
Target: 5'- -------cGGUGcCGCCCGCGaGCCGCg -3' miRNA: 3'- uacaaacuCCAC-GCGGGCGUgCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 10693 | 0.66 | 0.773488 |
Target: 5'- -------cGGUcGCGCCCGgGCGCgGCc -3' miRNA: 3'- uacaaacuCCA-CGCGGGCgUGCGgCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 11551 | 0.67 | 0.705302 |
Target: 5'- -cGUcUGGaGUGCGCCCaGCGggugcggcUGCCGCg -3' miRNA: 3'- uaCAaACUcCACGCGGG-CGU--------GCGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home