miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 12200 0.67 0.734101
Target:  5'- gAUGUcguAGGUGCGCUucuggcuUGCGCGgCGCg -3'
miRNA:   3'- -UACAaacUCCACGCGG-------GCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 12558 0.69 0.613566
Target:  5'- -----cGcAGGUGCGCaaCGgGCGCCGCg -3'
miRNA:   3'- uacaaaC-UCCACGCGg-GCgUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 12772 0.67 0.705302
Target:  5'- gAUGUcgcuGGacGCGCugugCCGCACGCCGCc -3'
miRNA:   3'- -UACAaacuCCa-CGCG----GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 12838 0.66 0.791968
Target:  5'- uUGg--GAGaUG-GCCgGUACGCCGCa -3'
miRNA:   3'- uACaaaCUCcACgCGGgCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 13345 0.66 0.791968
Target:  5'- -----cGAGcagGCGCCCGCGaggacgcuccaGCCGCg -3'
miRNA:   3'- uacaaaCUCca-CGCGGGCGUg----------CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 13422 0.67 0.695239
Target:  5'- ------cGGGcGCGCCagCGCGCGCCGUg -3'
miRNA:   3'- uacaaacUCCaCGCGG--GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 13831 0.68 0.644309
Target:  5'- -cGUgUGAcGGUGCGCgaggGCACGCuCGCg -3'
miRNA:   3'- uaCAaACU-CCACGCGgg--CGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 13914 0.69 0.613566
Target:  5'- gGUGgcUG-GG-GCGCUCGgugcCGCGCCGCg -3'
miRNA:   3'- -UACaaACuCCaCGCGGGC----GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 14136 0.67 0.735082
Target:  5'- gAUGggcGGGGcccGCGCCUGgGCGgCCGCu -3'
miRNA:   3'- -UACaaaCUCCa--CGCGGGCgUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 14234 0.67 0.735082
Target:  5'- -cGUggUGAGG-GCaaacgccgaGCCCGCucuCGUCGCg -3'
miRNA:   3'- uaCAa-ACUCCaCG---------CGGGCGu--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 14342 0.67 0.744841
Target:  5'- -gGgcgUGGuGGcgGCGCCUGCggggaACGCCGCc -3'
miRNA:   3'- uaCaa-ACU-CCa-CGCGGGCG-----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 14626 0.71 0.465262
Target:  5'- -----cGuGGUuuucgaccgcgGCGCUCGCGCGCCGCu -3'
miRNA:   3'- uacaaaCuCCA-----------CGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 15276 0.74 0.315507
Target:  5'- cAUGgccuuugUGGGGUaCGCCUGCugGCUGCg -3'
miRNA:   3'- -UACaa-----ACUCCAcGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 18456 0.68 0.63406
Target:  5'- ----gUGcGGUgccGCGCCCGCAgCGCCGg -3'
miRNA:   3'- uacaaACuCCA---CGCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 18575 0.66 0.75354
Target:  5'- -----aGAGcgcagaugcccacGUGCGCCauuaGCGCGCCGUc -3'
miRNA:   3'- uacaaaCUC-------------CACGCGGg---CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 18827 0.66 0.773488
Target:  5'- ----aUGGGcacgGCGUCCucgcGCGCGCCGCa -3'
miRNA:   3'- uacaaACUCca--CGCGGG----CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 20967 0.72 0.43683
Target:  5'- -cGUUUgGAGcGaGCGCCCagugagcGCGCGCCGCu -3'
miRNA:   3'- uaCAAA-CUC-CaCGCGGG-------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 21516 0.71 0.455983
Target:  5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 22933 0.68 0.664769
Target:  5'- -gGUUguGGGUGCGCagguagGCAuCGCCGCa -3'
miRNA:   3'- uaCAAacUCCACGCGgg----CGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 23526 0.68 0.654548
Target:  5'- -----cGAGGUcGcCGCCCGUgaagACGCCGUu -3'
miRNA:   3'- uacaaaCUCCA-C-GCGGGCG----UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.