miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 24516 0.66 0.764054
Target:  5'- ----gUGGGcGUcgGgGCUCGCGCGCUGCa -3'
miRNA:   3'- uacaaACUC-CA--CgCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 24760 0.66 0.764054
Target:  5'- -cGgcUGAGGUGCGa-CGCGCgGUCGUc -3'
miRNA:   3'- uaCaaACUCCACGCggGCGUG-CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 24918 0.66 0.764054
Target:  5'- cAUGUUU-AGcacgGCCCGCACGUCGCa -3'
miRNA:   3'- -UACAAAcUCcacgCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 26973 0.71 0.484107
Target:  5'- ----aUGAGGUGCGCgCGCagcGCGuCUGCg -3'
miRNA:   3'- uacaaACUCCACGCGgGCG---UGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 27435 0.77 0.226343
Target:  5'- -----cGGGGUGCccGCCCGCgaGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCACG--CGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 27692 0.69 0.572803
Target:  5'- -gGgcUGAGGcgcgcgaGCGCCgGCGgGCCGCc -3'
miRNA:   3'- uaCaaACUCCa------CGCGGgCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 28177 0.67 0.741923
Target:  5'- -cGUU--GGGUuaccuggcggccgcGCGCCUGCGCGCCa- -3'
miRNA:   3'- uaCAAacUCCA--------------CGCGGGCGUGCGGcg -5'
6345 5' -58.2 NC_001847.1 + 28420 0.71 0.465262
Target:  5'- -----cGGGGcuuaGCGCCCuggcGCACGCCGCc -3'
miRNA:   3'- uacaaaCUCCa---CGCGGG----CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 28508 0.66 0.754502
Target:  5'- -----cGAGGcGUgGCCCggcaGCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCG-CGGG----CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 28983 0.66 0.754502
Target:  5'- -----cGGGaacGUGCGCCaugcuagaGCGCGCCGUg -3'
miRNA:   3'- uacaaaCUC---CACGCGGg-------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 29005 0.68 0.663748
Target:  5'- -----gGAGGccgGCGCCgGCggcagcggcgcccGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGgCG-------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 29176 0.69 0.62381
Target:  5'- -----gGAGGcG-GCCCGcCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCgCGGGC-GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 29569 0.71 0.474637
Target:  5'- -----cGGGGgcgccgGCGCCgGCGcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 29908 0.68 0.685124
Target:  5'- -----cGAaGUGCGCCCGCcugugcccgcGCGcCCGCg -3'
miRNA:   3'- uacaaaCUcCACGCGGGCG----------UGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 30216 0.67 0.70229
Target:  5'- -----cGAGGcGCuggccgagaucgcgGCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCG--------------CGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 30240 0.72 0.446806
Target:  5'- -----cGAGGUGCGCgugUCGCugGCgGCg -3'
miRNA:   3'- uacaaaCUCCACGCG---GGCGugCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 30360 0.67 0.705302
Target:  5'- -----cGGGGagGCGCUgGCGgCGCCGCc -3'
miRNA:   3'- uacaaaCUCCa-CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 31338 0.66 0.764054
Target:  5'- cGUGUaUGGGGagUGCGgCUucuaCACGCCGCc -3'
miRNA:   3'- -UACAaACUCC--ACGCgGGc---GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 31706 0.75 0.301296
Target:  5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3'
miRNA:   3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32041 0.66 0.764054
Target:  5'- -----cGGGGacgGCGCCCGCGCGggcuCgGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGGCGUGC----GgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.