Results 41 - 60 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 35454 | 0.66 | 0.791968 |
Target: 5'- -----cGGcGGccCGCgCCGCGCGCCGCa -3' miRNA: 3'- uacaaaCU-CCacGCG-GGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 53693 | 0.66 | 0.791968 |
Target: 5'- -----aGAuGUGCGCgCGCgagcGCGCCGCc -3' miRNA: 3'- uacaaaCUcCACGCGgGCG----UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 120445 | 0.66 | 0.791968 |
Target: 5'- -cGUUcGucAGcUGCGCCUGCuccauCGCCGCg -3' miRNA: 3'- uaCAAaC--UCcACGCGGGCGu----GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 61825 | 0.66 | 0.791968 |
Target: 5'- ----aUGAGGUcgucgGCGUCCGacuCGCCGUc -3' miRNA: 3'- uacaaACUCCA-----CGCGGGCgu-GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 62359 | 0.66 | 0.791968 |
Target: 5'- -----cGGGGUGCaGcCCCGUGCGCaGCu -3' miRNA: 3'- uacaaaCUCCACG-C-GGGCGUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 98184 | 0.66 | 0.782796 |
Target: 5'- ----------gGCGCCCGCGCugGCCGCa -3' miRNA: 3'- uacaaacuccaCGCGGGCGUG--CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 38126 | 0.66 | 0.780018 |
Target: 5'- ------cGGGUGCGCCgggcaccgagucuuCGCGCGgCGCg -3' miRNA: 3'- uacaaacUCCACGCGG--------------GCGUGCgGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 42474 | 0.66 | 0.754502 |
Target: 5'- gGUGcuggUGGGGcgGCGCgCCGaaGCGCUGCg -3' miRNA: 3'- -UACaa--ACUCCa-CGCG-GGCg-UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 43544 | 0.66 | 0.754502 |
Target: 5'- -----cGAGGagaaGCGCcgCCGCgaGCGCCGCg -3' miRNA: 3'- uacaaaCUCCa---CGCG--GGCG--UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 59619 | 0.66 | 0.754502 |
Target: 5'- -----cGcGGUGCG-CCGUGCGCUGCu -3' miRNA: 3'- uacaaaCuCCACGCgGGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 82829 | 0.66 | 0.754502 |
Target: 5'- cGUGUUUcccGGUuggcGcCGCCCGCGC-CCGCg -3' miRNA: 3'- -UACAAAcu-CCA----C-GCGGGCGUGcGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 52265 | 0.66 | 0.764054 |
Target: 5'- uUGgcUGcGGcGCGCCCGCACgggcgagcacguGCCGg -3' miRNA: 3'- uACaaACuCCaCGCGGGCGUG------------CGGCg -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 65874 | 0.66 | 0.764054 |
Target: 5'- -----aGAGGaa-GCCCGCGgcCGCCGCc -3' miRNA: 3'- uacaaaCUCCacgCGGGCGU--GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 32041 | 0.66 | 0.764054 |
Target: 5'- -----cGGGGacgGCGCCCGCGCGggcuCgGCg -3' miRNA: 3'- uacaaaCUCCa--CGCGGGCGUGC----GgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 104337 | 0.66 | 0.767842 |
Target: 5'- cGUGUUUGccgcGGcggcagacgcggcgGCGUCCGCGC-CCGCa -3' miRNA: 3'- -UACAAACu---CCa-------------CGCGGGCGUGcGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 81264 | 0.66 | 0.770671 |
Target: 5'- -----gGGGGgccCGCCCGCccccgcggcggucgGCGCCGCc -3' miRNA: 3'- uacaaaCUCCac-GCGGGCG--------------UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 118674 | 0.66 | 0.773488 |
Target: 5'- -----aGAGGUGU-CCgCGCucuGCGCCGCg -3' miRNA: 3'- uacaaaCUCCACGcGG-GCG---UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 10693 | 0.66 | 0.773488 |
Target: 5'- -------cGGUcGCGCCCGgGCGCgGCc -3' miRNA: 3'- uacaaacuCCA-CGCGGGCgUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 52928 | 0.66 | 0.773488 |
Target: 5'- ------cGGG-GCGCCCGCGaagGCCGUg -3' miRNA: 3'- uacaaacUCCaCGCGGGCGUg--CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 113648 | 0.66 | 0.773488 |
Target: 5'- -----cGAGGcGCGCCCGgCAaauuccuuCGCCGUu -3' miRNA: 3'- uacaaaCUCCaCGCGGGC-GU--------GCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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