miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 44931 0.66 0.791058
Target:  5'- cGUGUcgcuGGG-GCGCUCgggcugggcgacgGCGCGCCGCa -3'
miRNA:   3'- -UACAaac-UCCaCGCGGG-------------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 102228 0.66 0.790146
Target:  5'- -cGUcgGGcGGgacggcguccagGCGCUCGCGCGCgGCg -3'
miRNA:   3'- uaCAaaCU-CCa-----------CGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 90684 0.66 0.782796
Target:  5'- ------cAGGUagcugucucgcGCGCgugCCGCGCGCCGCg -3'
miRNA:   3'- uacaaacUCCA-----------CGCG---GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 80552 0.66 0.782796
Target:  5'- ------cGGGcGCGCgCCGCcaGCGCCGCc -3'
miRNA:   3'- uacaaacUCCaCGCG-GGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 55914 0.66 0.782796
Target:  5'- -----cGGGGagcGCGCCCGUgauccgcggccgGCGUCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGGCG------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 107342 0.66 0.782796
Target:  5'- -----cGGGGcGCgaauggccagaGCCCGCAccCGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCG-----------CGGGCGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 101909 0.66 0.754502
Target:  5'- -----gGAGGcgccgcgGCGCCCgGCGCGgCGCc -3'
miRNA:   3'- uacaaaCUCCa------CGCGGG-CGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 38126 0.66 0.780018
Target:  5'- ------cGGGUGCGCCgggcaccgagucuuCGCGCGgCGCg -3'
miRNA:   3'- uacaaacUCCACGCGG--------------GCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 113648 0.66 0.773488
Target:  5'- -----cGAGGcGCGCCCGgCAaauuccuuCGCCGUu -3'
miRNA:   3'- uacaaaCUCCaCGCGGGC-GU--------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 52928 0.66 0.773488
Target:  5'- ------cGGG-GCGCCCGCGaagGCCGUg -3'
miRNA:   3'- uacaaacUCCaCGCGGGCGUg--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 10693 0.66 0.773488
Target:  5'- -------cGGUcGCGCCCGgGCGCgGCc -3'
miRNA:   3'- uacaaacuCCA-CGCGGGCgUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 118674 0.66 0.773488
Target:  5'- -----aGAGGUGU-CCgCGCucuGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCACGcGG-GCG---UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 81264 0.66 0.770671
Target:  5'- -----gGGGGgccCGCCCGCccccgcggcggucgGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCac-GCGGGCG--------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 104337 0.66 0.767842
Target:  5'- cGUGUUUGccgcGGcggcagacgcggcgGCGUCCGCGC-CCGCa -3'
miRNA:   3'- -UACAAACu---CCa-------------CGCGGGCGUGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32041 0.66 0.764054
Target:  5'- -----cGGGGacgGCGCCCGCGCGggcuCgGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGGCGUGC----GgCG- -5'
6345 5' -58.2 NC_001847.1 + 65874 0.66 0.764054
Target:  5'- -----aGAGGaa-GCCCGCGgcCGCCGCc -3'
miRNA:   3'- uacaaaCUCCacgCGGGCGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 52265 0.66 0.764054
Target:  5'- uUGgcUGcGGcGCGCCCGCACgggcgagcacguGCCGg -3'
miRNA:   3'- uACaaACuCCaCGCGGGCGUG------------CGGCg -5'
6345 5' -58.2 NC_001847.1 + 82829 0.66 0.754502
Target:  5'- cGUGUUUcccGGUuggcGcCGCCCGCGC-CCGCg -3'
miRNA:   3'- -UACAAAcu-CCA----C-GCGGGCGUGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 59619 0.66 0.754502
Target:  5'- -----cGcGGUGCG-CCGUGCGCUGCu -3'
miRNA:   3'- uacaaaCuCCACGCgGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 43544 0.66 0.754502
Target:  5'- -----cGAGGagaaGCGCcgCCGCgaGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa---CGCG--GGCG--UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.