miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 134519 0.75 0.301296
Target:  5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3'
miRNA:   3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 106592 0.7 0.5627
Target:  5'- ------cGGGUGuCGCCCGCGcCGCCGa -3'
miRNA:   3'- uacaaacUCCAC-GCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 18456 0.68 0.63406
Target:  5'- ----gUGcGGUgccGCGCCCGCAgCGCCGg -3'
miRNA:   3'- uacaaACuCCA---CGCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 119044 0.69 0.62381
Target:  5'- cUGUggGAagcGGUaCGCCgGCACGCgCGCg -3'
miRNA:   3'- uACAaaCU---CCAcGCGGgCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 32896 0.7 0.552646
Target:  5'- -------cGGUGCGCgCCGCGCGCgaGCg -3'
miRNA:   3'- uacaaacuCCACGCG-GGCGUGCGg-CG- -5'
6345 5' -58.2 NC_001847.1 + 34623 0.73 0.369172
Target:  5'- -----cGAGGaaguccgGCGCCUGCGCGCCGa -3'
miRNA:   3'- uacaaaCUCCa------CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 68453 0.75 0.301296
Target:  5'- -----aGAGGUccGCGCCCGCGgccggggcccCGCCGCg -3'
miRNA:   3'- uacaaaCUCCA--CGCGGGCGU----------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 51539 0.75 0.280915
Target:  5'- cAUGUcgGAGGcUGCGCgCGCGCGCgUGCu -3'
miRNA:   3'- -UACAaaCUCC-ACGCGgGCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 49453 0.72 0.446806
Target:  5'- cGUGUUUGucuuucacggcGGcgaGCGCCUGCGCGCCaGCa -3'
miRNA:   3'- -UACAAACu----------CCa--CGCGGGCGUGCGG-CG- -5'
6345 5' -58.2 NC_001847.1 + 94233 0.71 0.493665
Target:  5'- ------cGGG-GCGCCCGCGCGgCGCc -3'
miRNA:   3'- uacaaacUCCaCGCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 82601 0.71 0.484107
Target:  5'- -----cGcGGcgGCGCCUGUGCGCCGCg -3'
miRNA:   3'- uacaaaCuCCa-CGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 101384 0.72 0.446806
Target:  5'- -----cGGGG-GCuGCCCGCGgCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCG-CGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 4178 0.74 0.3228
Target:  5'- uUGUUUuGGGccgcGCGCCCGUggGCCGCg -3'
miRNA:   3'- uACAAAcUCCa---CGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32139 0.69 0.593127
Target:  5'- ----cUGGGcGccgccGCGCCCGCgcACGCCGCg -3'
miRNA:   3'- uacaaACUC-Ca----CGCGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 87660 0.69 0.581931
Target:  5'- cUGUUUGGGcUGCGCCgcauggcccgggCGCuggggcugcugcgGCGCCGCg -3'
miRNA:   3'- uACAAACUCcACGCGG------------GCG-------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 97437 0.7 0.532709
Target:  5'- ---cUUGuuGcUGCGCagCCGCGCGCCGCa -3'
miRNA:   3'- uacaAACucC-ACGCG--GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 89912 0.69 0.62381
Target:  5'- -----cGAGGuUGUGCCgCGCGagGCCGCg -3'
miRNA:   3'- uacaaaCUCC-ACGCGG-GCGUg-CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 105880 0.65 0.798304
Target:  5'- ------cGGGUGCGCCgccagcgcguccggCGCGCagGCCGCg -3'
miRNA:   3'- uacaaacUCCACGCGG--------------GCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 13831 0.68 0.644309
Target:  5'- -cGUgUGAcGGUGCGCgaggGCACGCuCGCg -3'
miRNA:   3'- uaCAaACU-CCACGCGgg--CGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 38031 0.69 0.603335
Target:  5'- cUGU---GGGcGCGCgCCGcCGCGCCGCc -3'
miRNA:   3'- uACAaacUCCaCGCG-GGC-GUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.