miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 124329 0.71 0.455983
Target:  5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 101384 0.72 0.446806
Target:  5'- -----cGGGG-GCuGCCCGCGgCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCG-CGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 59895 0.74 0.3228
Target:  5'- -cGUUggcgagGAGGgcgGCGCgCGCGCGCgGCg -3'
miRNA:   3'- uaCAAa-----CUCCa--CGCGgGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 101793 0.76 0.261643
Target:  5'- -aGggUGAGGUGCgagggGCCCaccgucacgcaGCGCGCCGCc -3'
miRNA:   3'- uaCaaACUCCACG-----CGGG-----------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 55464 0.7 0.532709
Target:  5'- -----cGGGGcGCGCgCCGCGCuaGCCGCu -3'
miRNA:   3'- uacaaaCUCCaCGCG-GGCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 132382 0.71 0.474637
Target:  5'- -----cGGGGgcgccgGCGCCgGCGcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 103181 0.72 0.41116
Target:  5'- -----cGGGGcccGC-CCCGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGcGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 27435 0.77 0.226343
Target:  5'- -----cGGGGUGCccGCCCGCgaGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCACG--CGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 61907 0.71 0.474637
Target:  5'- -----cGAGc-GCGCCCGCGcCGCCGCc -3'
miRNA:   3'- uacaaaCUCcaCGCGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 60827 0.78 0.190347
Target:  5'- gAUGgcgcGAGGgGCGCCCGCGgCGCUGCg -3'
miRNA:   3'- -UACaaa-CUCCaCGCGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 99452 0.72 0.428764
Target:  5'- -cGUggGAGuUGCGCa-GCGCGCCGCu -3'
miRNA:   3'- uaCAaaCUCcACGCGggCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3975 0.71 0.465262
Target:  5'- -----cGAGGUGgGCCgugaGCACGCCaGCg -3'
miRNA:   3'- uacaaaCUCCACgCGGg---CGUGCGG-CG- -5'
6345 5' -58.2 NC_001847.1 + 66203 0.73 0.369172
Target:  5'- cUGgcugGAGGcGCaGCCCGCGgcCGCCGCg -3'
miRNA:   3'- uACaaa-CUCCaCG-CGGGCGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 46751 0.74 0.330218
Target:  5'- -----cGAcGGcGCGCCCGCcCGCCGCg -3'
miRNA:   3'- uacaaaCU-CCaCGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 9610 0.75 0.308339
Target:  5'- -----cGGGGacgaccguagcUGCGCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCC-----------ACGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 51539 0.75 0.280915
Target:  5'- cAUGUcgGAGGcUGCGCgCGCGCGCgUGCu -3'
miRNA:   3'- -UACAaaCUCC-ACGCGgGCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 78782 0.7 0.5627
Target:  5'- -----cGAGGUcguGcCGCCCGCGC-CCGCg -3'
miRNA:   3'- uacaaaCUCCA---C-GCGGGCGUGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 97437 0.7 0.532709
Target:  5'- ---cUUGuuGcUGCGCagCCGCGCGCCGCa -3'
miRNA:   3'- uacaAACucC-ACGCG--GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 113201 0.71 0.503309
Target:  5'- -------cGGUGcCGCCCGCGaGCCGCg -3'
miRNA:   3'- uacaaacuCCAC-GCGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 82601 0.71 0.484107
Target:  5'- -----cGcGGcgGCGCCUGUGCGCCGCg -3'
miRNA:   3'- uacaaaCuCCa-CGCGGGCGUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.