Results 21 - 40 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 79083 | 0.8 | 0.151524 |
Target: 5'- -cGUgcGAcGUGUGCCCGUGCGCCGCg -3' miRNA: 3'- uaCAaaCUcCACGCGGGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 94233 | 0.71 | 0.493665 |
Target: 5'- ------cGGG-GCGCCCGCGCGgCGCc -3' miRNA: 3'- uacaaacUCCaCGCGGGCGUGCgGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 26973 | 0.71 | 0.484107 |
Target: 5'- ----aUGAGGUGCGCgCGCagcGCGuCUGCg -3' miRNA: 3'- uacaaACUCCACGCGgGCG---UGC-GGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 30240 | 0.72 | 0.446806 |
Target: 5'- -----cGAGGUGCGCgugUCGCugGCgGCg -3' miRNA: 3'- uacaaaCUCCACGCG---GGCGugCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 122568 | 0.74 | 0.337761 |
Target: 5'- -aGUgcGAGG-GCGCCgCGUACGCgGCg -3' miRNA: 3'- uaCAaaCUCCaCGCGG-GCGUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 106737 | 0.7 | 0.552646 |
Target: 5'- -------cGGUugcGCGCCCGCgcugGCGCCGCg -3' miRNA: 3'- uacaaacuCCA---CGCGGGCG----UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 1966 | 0.7 | 0.513034 |
Target: 5'- -----cGAGG-GCaGCCCGCGC-CCGCg -3' miRNA: 3'- uacaaaCUCCaCG-CGGGCGUGcGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 15276 | 0.74 | 0.315507 |
Target: 5'- cAUGgccuuugUGGGGUaCGCCUGCugGCUGCg -3' miRNA: 3'- -UACaa-----ACUCCAcGCGGGCGugCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 28420 | 0.71 | 0.465262 |
Target: 5'- -----cGGGGcuuaGCGCCCuggcGCACGCCGCc -3' miRNA: 3'- uacaaaCUCCa---CGCGGG----CGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 124329 | 0.71 | 0.455983 |
Target: 5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3' miRNA: 3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 134519 | 0.75 | 0.301296 |
Target: 5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3' miRNA: 3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 68453 | 0.75 | 0.301296 |
Target: 5'- -----aGAGGUccGCGCCCGCGgccggggcccCGCCGCg -3' miRNA: 3'- uacaaaCUCCA--CGCGGGCGU----------GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 106592 | 0.7 | 0.5627 |
Target: 5'- ------cGGGUGuCGCCCGCGcCGCCGa -3' miRNA: 3'- uacaaacUCCAC-GCGGGCGU-GCGGCg -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 32896 | 0.7 | 0.552646 |
Target: 5'- -------cGGUGCGCgCCGCGCGCgaGCg -3' miRNA: 3'- uacaaacuCCACGCG-GGCGUGCGg-CG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 82601 | 0.71 | 0.484107 |
Target: 5'- -----cGcGGcgGCGCCUGUGCGCCGCg -3' miRNA: 3'- uacaaaCuCCa-CGCGGGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 34623 | 0.73 | 0.369172 |
Target: 5'- -----cGAGGaaguccgGCGCCUGCGCGCCGa -3' miRNA: 3'- uacaaaCUCCa------CGCGGGCGUGCGGCg -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 106172 | 0.74 | 0.35322 |
Target: 5'- ----aUGGGG-GCGUaCGCGCGCCGCa -3' miRNA: 3'- uacaaACUCCaCGCGgGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 51539 | 0.75 | 0.280915 |
Target: 5'- cAUGUcgGAGGcUGCGCgCGCGCGCgUGCu -3' miRNA: 3'- -UACAaaCUCC-ACGCGgGCGUGCG-GCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 49453 | 0.72 | 0.446806 |
Target: 5'- cGUGUUUGucuuucacggcGGcgaGCGCCUGCGCGCCaGCa -3' miRNA: 3'- -UACAAACu----------CCa--CGCGGGCGUGCGG-CG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 67264 | 0.71 | 0.465262 |
Target: 5'- -gGUUacgUGGGGUGcCGCCguucccaGCGCGUCGCg -3' miRNA: 3'- uaCAA---ACUCCAC-GCGGg------CGUGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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