miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 79083 0.8 0.151524
Target:  5'- -cGUgcGAcGUGUGCCCGUGCGCCGCg -3'
miRNA:   3'- uaCAaaCUcCACGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 94233 0.71 0.493665
Target:  5'- ------cGGG-GCGCCCGCGCGgCGCc -3'
miRNA:   3'- uacaaacUCCaCGCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 26973 0.71 0.484107
Target:  5'- ----aUGAGGUGCGCgCGCagcGCGuCUGCg -3'
miRNA:   3'- uacaaACUCCACGCGgGCG---UGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 30240 0.72 0.446806
Target:  5'- -----cGAGGUGCGCgugUCGCugGCgGCg -3'
miRNA:   3'- uacaaaCUCCACGCG---GGCGugCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 122568 0.74 0.337761
Target:  5'- -aGUgcGAGG-GCGCCgCGUACGCgGCg -3'
miRNA:   3'- uaCAaaCUCCaCGCGG-GCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 106737 0.7 0.552646
Target:  5'- -------cGGUugcGCGCCCGCgcugGCGCCGCg -3'
miRNA:   3'- uacaaacuCCA---CGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 1966 0.7 0.513034
Target:  5'- -----cGAGG-GCaGCCCGCGC-CCGCg -3'
miRNA:   3'- uacaaaCUCCaCG-CGGGCGUGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 15276 0.74 0.315507
Target:  5'- cAUGgccuuugUGGGGUaCGCCUGCugGCUGCg -3'
miRNA:   3'- -UACaa-----ACUCCAcGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 28420 0.71 0.465262
Target:  5'- -----cGGGGcuuaGCGCCCuggcGCACGCCGCc -3'
miRNA:   3'- uacaaaCUCCa---CGCGGG----CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 124329 0.71 0.455983
Target:  5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 134519 0.75 0.301296
Target:  5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3'
miRNA:   3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 68453 0.75 0.301296
Target:  5'- -----aGAGGUccGCGCCCGCGgccggggcccCGCCGCg -3'
miRNA:   3'- uacaaaCUCCA--CGCGGGCGU----------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 106592 0.7 0.5627
Target:  5'- ------cGGGUGuCGCCCGCGcCGCCGa -3'
miRNA:   3'- uacaaacUCCAC-GCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 32896 0.7 0.552646
Target:  5'- -------cGGUGCGCgCCGCGCGCgaGCg -3'
miRNA:   3'- uacaaacuCCACGCG-GGCGUGCGg-CG- -5'
6345 5' -58.2 NC_001847.1 + 82601 0.71 0.484107
Target:  5'- -----cGcGGcgGCGCCUGUGCGCCGCg -3'
miRNA:   3'- uacaaaCuCCa-CGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 34623 0.73 0.369172
Target:  5'- -----cGAGGaaguccgGCGCCUGCGCGCCGa -3'
miRNA:   3'- uacaaaCUCCa------CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 106172 0.74 0.35322
Target:  5'- ----aUGGGG-GCGUaCGCGCGCCGCa -3'
miRNA:   3'- uacaaACUCCaCGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 51539 0.75 0.280915
Target:  5'- cAUGUcgGAGGcUGCGCgCGCGCGCgUGCu -3'
miRNA:   3'- -UACAaaCUCC-ACGCGgGCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 49453 0.72 0.446806
Target:  5'- cGUGUUUGucuuucacggcGGcgaGCGCCUGCGCGCCaGCa -3'
miRNA:   3'- -UACAAACu----------CCa--CGCGGGCGUGCGG-CG- -5'
6345 5' -58.2 NC_001847.1 + 67264 0.71 0.465262
Target:  5'- -gGUUacgUGGGGUGcCGCCguucccaGCGCGUCGCg -3'
miRNA:   3'- uaCAA---ACUCCAC-GCGGg------CGUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.