miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 79083 0.8 0.151524
Target:  5'- -cGUgcGAcGUGUGCCCGUGCGCCGCg -3'
miRNA:   3'- uaCAaaCUcCACGCGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 103181 0.72 0.41116
Target:  5'- -----cGGGGcccGC-CCCGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGcGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 101384 0.72 0.446806
Target:  5'- -----cGGGG-GCuGCCCGCGgCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCG-CGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 105880 0.65 0.798304
Target:  5'- ------cGGGUGCGCCgccagcgcguccggCGCGCagGCCGCg -3'
miRNA:   3'- uacaaacUCCACGCGG--------------GCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 51539 0.75 0.280915
Target:  5'- cAUGUcgGAGGcUGCGCgCGCGCGCgUGCu -3'
miRNA:   3'- -UACAaaCUCC-ACGCGgGCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 68453 0.75 0.301296
Target:  5'- -----aGAGGUccGCGCCCGCGgccggggcccCGCCGCg -3'
miRNA:   3'- uacaaaCUCCA--CGCGGGCGU----------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 9610 0.75 0.308339
Target:  5'- -----cGGGGacgaccguagcUGCGCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCC-----------ACGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 15276 0.74 0.315507
Target:  5'- cAUGgccuuugUGGGGUaCGCCUGCugGCUGCg -3'
miRNA:   3'- -UACaa-----ACUCCAcGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 46751 0.74 0.330218
Target:  5'- -----cGAcGGcGCGCCCGCcCGCCGCg -3'
miRNA:   3'- uacaaaCU-CCaCGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 76897 0.73 0.369172
Target:  5'- cUGacgGAGG-GCGgUCGCGCGCCGCc -3'
miRNA:   3'- uACaaaCUCCaCGCgGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 106172 0.74 0.35322
Target:  5'- ----aUGGGG-GCGUaCGCGCGCCGCa -3'
miRNA:   3'- uacaaACUCCaCGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 59895 0.74 0.3228
Target:  5'- -cGUUggcgagGAGGgcgGCGCgCGCGCGCgGCg -3'
miRNA:   3'- uaCAAa-----CUCCa--CGCGgGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 60827 0.78 0.190347
Target:  5'- gAUGgcgcGAGGgGCGCCCGCGgCGCUGCg -3'
miRNA:   3'- -UACaaa-CUCCaCGCGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 66203 0.73 0.369172
Target:  5'- cUGgcugGAGGcGCaGCCCGCGgcCGCCGCg -3'
miRNA:   3'- uACaaa-CUCCaCG-CGGGCGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 27435 0.77 0.226343
Target:  5'- -----cGGGGUGCccGCCCGCgaGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCACG--CGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 4178 0.74 0.3228
Target:  5'- uUGUUUuGGGccgcGCGCCCGUggGCCGCg -3'
miRNA:   3'- uACAAAcUCCa---CGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 34623 0.73 0.369172
Target:  5'- -----cGAGGaaguccgGCGCCUGCGCGCCGa -3'
miRNA:   3'- uacaaaCUCCa------CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 99452 0.72 0.428764
Target:  5'- -cGUggGAGuUGCGCa-GCGCGCCGCu -3'
miRNA:   3'- uaCAaaCUCcACGCGggCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 101793 0.76 0.261643
Target:  5'- -aGggUGAGGUGCgagggGCCCaccgucacgcaGCGCGCCGCc -3'
miRNA:   3'- uaCaaACUCCACG-----CGGG-----------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 134519 0.75 0.301296
Target:  5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3'
miRNA:   3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.