Results 21 - 40 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 3359 | 0.74 | 0.35322 |
Target: 5'- ----aUGGGG-GCGUaCGCGCGCCGCa -3' miRNA: 3'- uacaaACUCCaCGCGgGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 76897 | 0.73 | 0.369172 |
Target: 5'- cUGacgGAGG-GCGgUCGCGCGCCGCc -3' miRNA: 3'- uACaaaCUCCaCGCgGGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 66203 | 0.73 | 0.369172 |
Target: 5'- cUGgcugGAGGcGCaGCCCGCGgcCGCCGCg -3' miRNA: 3'- uACaaa-CUCCaCG-CGGGCGU--GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 34623 | 0.73 | 0.369172 |
Target: 5'- -----cGAGGaaguccgGCGCCUGCGCGCCGa -3' miRNA: 3'- uacaaaCUCCa------CGCGGGCGUGCGGCg -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 99561 | 0.73 | 0.369172 |
Target: 5'- -gGUucUUGAGGUuggccagcccgGCGCCCucgucgcggucGCGCGCCGCc -3' miRNA: 3'- uaCA--AACUCCA-----------CGCGGG-----------CGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 99630 | 0.73 | 0.377332 |
Target: 5'- -----cGAGGaUGCGCUcggCGCGCGCCGUg -3' miRNA: 3'- uacaaaCUCC-ACGCGG---GCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 74833 | 0.72 | 0.41116 |
Target: 5'- -----aGcAGGUgGCGCgCGCGCGCCGCc -3' miRNA: 3'- uacaaaC-UCCA-CGCGgGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 103181 | 0.72 | 0.41116 |
Target: 5'- -----cGGGGcccGC-CCCGCGCGCCGCg -3' miRNA: 3'- uacaaaCUCCa--CGcGGGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 124273 | 0.72 | 0.41116 |
Target: 5'- -gGUcUGccuGG-GCGCCCGCGCccGCCGCg -3' miRNA: 3'- uaCAaACu--CCaCGCGGGCGUG--CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 368 | 0.72 | 0.41116 |
Target: 5'- -----cGGGGcccGC-CCCGCGCGCCGCg -3' miRNA: 3'- uacaaaCUCCa--CGcGGGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 99452 | 0.72 | 0.428764 |
Target: 5'- -cGUggGAGuUGCGCa-GCGCGCCGCu -3' miRNA: 3'- uaCAaaCUCcACGCGggCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 71707 | 0.72 | 0.428764 |
Target: 5'- -cGUcUGcgcGGUGCGCCgGCccgccgGCGCCGCg -3' miRNA: 3'- uaCAaACu--CCACGCGGgCG------UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 20967 | 0.72 | 0.43683 |
Target: 5'- -cGUUUgGAGcGaGCGCCCagugagcGCGCGCCGCu -3' miRNA: 3'- uaCAAA-CUC-CaCGCGGG-------CGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 127030 | 0.72 | 0.437732 |
Target: 5'- ----cUGGGGccccGCGCCUGCgcugGCGCCGCg -3' miRNA: 3'- uacaaACUCCa---CGCGGGCG----UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 30240 | 0.72 | 0.446806 |
Target: 5'- -----cGAGGUGCGCgugUCGCugGCgGCg -3' miRNA: 3'- uacaaaCUCCACGCG---GGCGugCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 101384 | 0.72 | 0.446806 |
Target: 5'- -----cGGGG-GCuGCCCGCGgCGCCGCc -3' miRNA: 3'- uacaaaCUCCaCG-CGGGCGU-GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 49453 | 0.72 | 0.446806 |
Target: 5'- cGUGUUUGucuuucacggcGGcgaGCGCCUGCGCGCCaGCa -3' miRNA: 3'- -UACAAACu----------CCa--CGCGGGCGUGCGG-CG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 124329 | 0.71 | 0.455983 |
Target: 5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3' miRNA: 3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 114133 | 0.71 | 0.455983 |
Target: 5'- ------aGGGU-CGCCCGCACaGCCGCg -3' miRNA: 3'- uacaaacUCCAcGCGGGCGUG-CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 21516 | 0.71 | 0.455983 |
Target: 5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3' miRNA: 3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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