miRNA display CGI


Results 21 - 40 of 273 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 3359 0.74 0.35322
Target:  5'- ----aUGGGG-GCGUaCGCGCGCCGCa -3'
miRNA:   3'- uacaaACUCCaCGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 76897 0.73 0.369172
Target:  5'- cUGacgGAGG-GCGgUCGCGCGCCGCc -3'
miRNA:   3'- uACaaaCUCCaCGCgGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 66203 0.73 0.369172
Target:  5'- cUGgcugGAGGcGCaGCCCGCGgcCGCCGCg -3'
miRNA:   3'- uACaaa-CUCCaCG-CGGGCGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 34623 0.73 0.369172
Target:  5'- -----cGAGGaaguccgGCGCCUGCGCGCCGa -3'
miRNA:   3'- uacaaaCUCCa------CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 99561 0.73 0.369172
Target:  5'- -gGUucUUGAGGUuggccagcccgGCGCCCucgucgcggucGCGCGCCGCc -3'
miRNA:   3'- uaCA--AACUCCA-----------CGCGGG-----------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 99630 0.73 0.377332
Target:  5'- -----cGAGGaUGCGCUcggCGCGCGCCGUg -3'
miRNA:   3'- uacaaaCUCC-ACGCGG---GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 74833 0.72 0.41116
Target:  5'- -----aGcAGGUgGCGCgCGCGCGCCGCc -3'
miRNA:   3'- uacaaaC-UCCA-CGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 103181 0.72 0.41116
Target:  5'- -----cGGGGcccGC-CCCGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGcGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 124273 0.72 0.41116
Target:  5'- -gGUcUGccuGG-GCGCCCGCGCccGCCGCg -3'
miRNA:   3'- uaCAaACu--CCaCGCGGGCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 368 0.72 0.41116
Target:  5'- -----cGGGGcccGC-CCCGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGcGGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 99452 0.72 0.428764
Target:  5'- -cGUggGAGuUGCGCa-GCGCGCCGCu -3'
miRNA:   3'- uaCAaaCUCcACGCGggCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 71707 0.72 0.428764
Target:  5'- -cGUcUGcgcGGUGCGCCgGCccgccgGCGCCGCg -3'
miRNA:   3'- uaCAaACu--CCACGCGGgCG------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 20967 0.72 0.43683
Target:  5'- -cGUUUgGAGcGaGCGCCCagugagcGCGCGCCGCu -3'
miRNA:   3'- uaCAAA-CUC-CaCGCGGG-------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 127030 0.72 0.437732
Target:  5'- ----cUGGGGccccGCGCCUGCgcugGCGCCGCg -3'
miRNA:   3'- uacaaACUCCa---CGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 30240 0.72 0.446806
Target:  5'- -----cGAGGUGCGCgugUCGCugGCgGCg -3'
miRNA:   3'- uacaaaCUCCACGCG---GGCGugCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 101384 0.72 0.446806
Target:  5'- -----cGGGG-GCuGCCCGCGgCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCG-CGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 49453 0.72 0.446806
Target:  5'- cGUGUUUGucuuucacggcGGcgaGCGCCUGCGCGCCaGCa -3'
miRNA:   3'- -UACAAACu----------CCa--CGCGGGCGUGCGG-CG- -5'
6345 5' -58.2 NC_001847.1 + 124329 0.71 0.455983
Target:  5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 114133 0.71 0.455983
Target:  5'- ------aGGGU-CGCCCGCACaGCCGCg -3'
miRNA:   3'- uacaaacUCCAcGCGGGCGUG-CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 21516 0.71 0.455983
Target:  5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.