Results 21 - 40 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 98184 | 0.66 | 0.782796 |
Target: 5'- ----------gGCGCCCGCGCugGCCGCa -3' miRNA: 3'- uacaaacuccaCGCGGGCGUG--CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 107342 | 0.66 | 0.782796 |
Target: 5'- -----cGGGGcGCgaauggccagaGCCCGCAccCGCCGCg -3' miRNA: 3'- uacaaaCUCCaCG-----------CGGGCGU--GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 55914 | 0.66 | 0.782796 |
Target: 5'- -----cGGGGagcGCGCCCGUgauccgcggccgGCGUCGCg -3' miRNA: 3'- uacaaaCUCCa--CGCGGGCG------------UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 80552 | 0.66 | 0.782796 |
Target: 5'- ------cGGGcGCGCgCCGCcaGCGCCGCc -3' miRNA: 3'- uacaaacUCCaCGCG-GGCG--UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 90684 | 0.66 | 0.782796 |
Target: 5'- ------cAGGUagcugucucgcGCGCgugCCGCGCGCCGCg -3' miRNA: 3'- uacaaacUCCA-----------CGCG---GGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 38126 | 0.66 | 0.780018 |
Target: 5'- ------cGGGUGCGCCgggcaccgagucuuCGCGCGgCGCg -3' miRNA: 3'- uacaaacUCCACGCGG--------------GCGUGCgGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 118674 | 0.66 | 0.773488 |
Target: 5'- -----aGAGGUGU-CCgCGCucuGCGCCGCg -3' miRNA: 3'- uacaaaCUCCACGcGG-GCG---UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 33215 | 0.66 | 0.773488 |
Target: 5'- -cGggUGGcucGGcuugGCGCCgCGCcggGCGCCGCg -3' miRNA: 3'- uaCaaACU---CCa---CGCGG-GCG---UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 113506 | 0.66 | 0.773488 |
Target: 5'- -------cGGUcGCGCCCGgGCGCgGCc -3' miRNA: 3'- uacaaacuCCA-CGCGGGCgUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 18827 | 0.66 | 0.773488 |
Target: 5'- ----aUGGGcacgGCGUCCucgcGCGCGCCGCa -3' miRNA: 3'- uacaaACUCca--CGCGGG----CGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 10693 | 0.66 | 0.773488 |
Target: 5'- -------cGGUcGCGCCCGgGCGCgGCc -3' miRNA: 3'- uacaaacuCCA-CGCGGGCgUGCGgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 113648 | 0.66 | 0.773488 |
Target: 5'- -----cGAGGcGCGCCCGgCAaauuccuuCGCCGUu -3' miRNA: 3'- uacaaaCUCCaCGCGGGC-GU--------GCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 117282 | 0.66 | 0.773488 |
Target: 5'- -cGUUUuGGG-GCGCCC-CGCGCC-Cg -3' miRNA: 3'- uaCAAAcUCCaCGCGGGcGUGCGGcG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 52928 | 0.66 | 0.773488 |
Target: 5'- ------cGGG-GCGCCCGCGaagGCCGUg -3' miRNA: 3'- uacaaacUCCaCGCGGGCGUg--CGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 81264 | 0.66 | 0.770671 |
Target: 5'- -----gGGGGgccCGCCCGCccccgcggcggucgGCGCCGCc -3' miRNA: 3'- uacaaaCUCCac-GCGGGCG--------------UGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 104337 | 0.66 | 0.767842 |
Target: 5'- cGUGUUUGccgcGGcggcagacgcggcgGCGUCCGCGC-CCGCa -3' miRNA: 3'- -UACAAACu---CCa-------------CGCGGGCGUGcGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 24918 | 0.66 | 0.764054 |
Target: 5'- cAUGUUU-AGcacgGCCCGCACGUCGCa -3' miRNA: 3'- -UACAAAcUCcacgCGGGCGUGCGGCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 32041 | 0.66 | 0.764054 |
Target: 5'- -----cGGGGacgGCGCCCGCGCGggcuCgGCg -3' miRNA: 3'- uacaaaCUCCa--CGCGGGCGUGC----GgCG- -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 52265 | 0.66 | 0.764054 |
Target: 5'- uUGgcUGcGGcGCGCCCGCACgggcgagcacguGCCGg -3' miRNA: 3'- uACaaACuCCaCGCGGGCGUG------------CGGCg -5' |
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6345 | 5' | -58.2 | NC_001847.1 | + | 97555 | 0.66 | 0.764054 |
Target: 5'- -cGcUUGAGGUccuuccggaucGUGUCCGUgagcugGCGCCGCc -3' miRNA: 3'- uaCaAACUCCA-----------CGCGGGCG------UGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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