miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 65874 0.66 0.764054
Target:  5'- -----aGAGGaa-GCCCGCGgcCGCCGCc -3'
miRNA:   3'- uacaaaCUCCacgCGGGCGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 52265 0.66 0.764054
Target:  5'- uUGgcUGcGGcGCGCCCGCACgggcgagcacguGCCGg -3'
miRNA:   3'- uACaaACuCCaCGCGGGCGUG------------CGGCg -5'
6345 5' -58.2 NC_001847.1 + 97555 0.66 0.764054
Target:  5'- -cGcUUGAGGUccuuccggaucGUGUCCGUgagcugGCGCCGCc -3'
miRNA:   3'- uaCaAACUCCA-----------CGCGGGCG------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32041 0.66 0.764054
Target:  5'- -----cGGGGacgGCGCCCGCGCGggcuCgGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGGCGUGC----GgCG- -5'
6345 5' -58.2 NC_001847.1 + 44444 0.66 0.764054
Target:  5'- -----cGGGGgcgcgGCGCgCgGCACGCgCGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCG-GgCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 24760 0.66 0.764054
Target:  5'- -cGgcUGAGGUGCGa-CGCGCgGUCGUc -3'
miRNA:   3'- uaCaaACUCCACGCggGCGUG-CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 134854 0.66 0.764054
Target:  5'- -----cGGGGacgGCGCCCGCGCGggcuCgGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGGCGUGC----GgCG- -5'
6345 5' -58.2 NC_001847.1 + 59309 0.66 0.754502
Target:  5'- -aGggUGccAGGgcgcgGCGCCgGCGgCGCCGUa -3'
miRNA:   3'- uaCaaAC--UCCa----CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 42474 0.66 0.754502
Target:  5'- gGUGcuggUGGGGcgGCGCgCCGaaGCGCUGCg -3'
miRNA:   3'- -UACaa--ACUCCa-CGCG-GGCg-UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 28983 0.66 0.754502
Target:  5'- -----cGGGaacGUGCGCCaugcuagaGCGCGCCGUg -3'
miRNA:   3'- uacaaaCUC---CACGCGGg-------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 43544 0.66 0.754502
Target:  5'- -----cGAGGagaaGCGCcgCCGCgaGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa---CGCG--GGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 101909 0.66 0.754502
Target:  5'- -----gGAGGcgccgcgGCGCCCgGCGCGgCGCc -3'
miRNA:   3'- uacaaaCUCCa------CGCGGG-CGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 42920 0.66 0.754502
Target:  5'- -----cGAGaGcGCGCgCUGCugGCCGCc -3'
miRNA:   3'- uacaaaCUC-CaCGCG-GGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 4985 0.66 0.754502
Target:  5'- ----cUGGGGUGCGgCgGC-CGCgGCa -3'
miRNA:   3'- uacaaACUCCACGCgGgCGuGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 131234 0.66 0.754502
Target:  5'- ----cUGuGcGUGCGUCCGCGCcaCCGCg -3'
miRNA:   3'- uacaaACuC-CACGCGGGCGUGc-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 59619 0.66 0.754502
Target:  5'- -----cGcGGUGCG-CCGUGCGCUGCu -3'
miRNA:   3'- uacaaaCuCCACGCgGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 82829 0.66 0.754502
Target:  5'- cGUGUUUcccGGUuggcGcCGCCCGCGC-CCGCg -3'
miRNA:   3'- -UACAAAcu-CCA----C-GCGGGCGUGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 28508 0.66 0.754502
Target:  5'- -----cGAGGcGUgGCCCggcaGCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCG-CGGG----CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 33688 0.66 0.754502
Target:  5'- -----aGAGGcgcagGCGCUCGCGgCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCGGGCGU-GCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 131321 0.66 0.754502
Target:  5'- -----cGAGGcGUgGCCCggcaGCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCG-CGGG----CGUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.