miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 18575 0.66 0.75354
Target:  5'- -----aGAGcgcagaugcccacGUGCGCCauuaGCGCGCCGUc -3'
miRNA:   3'- uacaaaCUC-------------CACGCGGg---CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 115266 0.67 0.744841
Target:  5'- ----------cGCGCCCGCcaGCGCCGCc -3'
miRNA:   3'- uacaaacuccaCGCGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 14342 0.67 0.744841
Target:  5'- -gGgcgUGGuGGcgGCGCCUGCggggaACGCCGCc -3'
miRNA:   3'- uaCaa-ACU-CCa-CGCGGGCG-----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 65506 0.67 0.744841
Target:  5'- -gGUgUGGGGcggcgcgcgcagUGCGgCCGCccggccGCGCCGCu -3'
miRNA:   3'- uaCAaACUCC------------ACGCgGGCG------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 62907 0.67 0.744841
Target:  5'- gGUGgcgcGGGUGCucgggGCCCGCGgGCgGCu -3'
miRNA:   3'- -UACaaacUCCACG-----CGGGCGUgCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 133205 0.67 0.744841
Target:  5'- -----gGAGGagcucUGCG-CCGCGCGCCGg -3'
miRNA:   3'- uacaaaCUCC-----ACGCgGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 60465 0.67 0.744841
Target:  5'- -cGUc--GGGcGCGUCCGCcaugGCGCCGCc -3'
miRNA:   3'- uaCAaacUCCaCGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 102802 0.67 0.744841
Target:  5'- -----gGGGGcUGgGCCCccucCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCC-ACgCGGGc---GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 71987 0.67 0.744841
Target:  5'- -----cGAcGUgcGCGCCUGCGCGCCGg -3'
miRNA:   3'- uacaaaCUcCA--CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 111314 0.67 0.744841
Target:  5'- -----cGGGGccgUGCGCgCGCugGaCCGCg -3'
miRNA:   3'- uacaaaCUCC---ACGCGgGCGugC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 116809 0.67 0.744841
Target:  5'- -----cGAcGGUaacGCGCCUGCA-GCCGCg -3'
miRNA:   3'- uacaaaCU-CCA---CGCGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 28177 0.67 0.741923
Target:  5'- -cGUU--GGGUuaccuggcggccgcGCGCCUGCGCGCCa- -3'
miRNA:   3'- uaCAAacUCCA--------------CGCGGGCGUGCGGcg -5'
6345 5' -58.2 NC_001847.1 + 38719 0.67 0.735082
Target:  5'- -----cGGGGccGCGCCUGC-CGCCGg -3'
miRNA:   3'- uacaaaCUCCa-CGCGGGCGuGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 53240 0.67 0.735082
Target:  5'- -------uGGUGCGCUgGCugcgGCGCCGCc -3'
miRNA:   3'- uacaaacuCCACGCGGgCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 87268 0.67 0.735082
Target:  5'- -----cGcGG-GCGCgCGCGCGCUGCg -3'
miRNA:   3'- uacaaaCuCCaCGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 14234 0.67 0.735082
Target:  5'- -cGUggUGAGG-GCaaacgccgaGCCCGCucuCGUCGCg -3'
miRNA:   3'- uaCAa-ACUCCaCG---------CGGGCGu--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 71749 0.67 0.735082
Target:  5'- -cGUgcGAGGcugcgGCGCaUCGCgcagACGCCGCg -3'
miRNA:   3'- uaCAaaCUCCa----CGCG-GGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 91506 0.67 0.735082
Target:  5'- -----cGucGUGCGCCCGCGCcCUGUa -3'
miRNA:   3'- uacaaaCucCACGCGGGCGUGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 105752 0.67 0.735082
Target:  5'- -gGUUagGAGG-GC-CUCGCGCGCgGCa -3'
miRNA:   3'- uaCAAa-CUCCaCGcGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 36541 0.67 0.735082
Target:  5'- -----cGGGGUGcCGCgCCGCccaaGCGCCGg -3'
miRNA:   3'- uacaaaCUCCAC-GCG-GGCG----UGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.