miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 32093 0.69 0.602314
Target:  5'- uUGggggGAGGggggaaacgcggcUGCgGCCCGCcCGCCGCc -3'
miRNA:   3'- uACaaa-CUCC-------------ACG-CGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32139 0.69 0.593127
Target:  5'- ----cUGGGcGccgccGCGCCCGCgcACGCCGCg -3'
miRNA:   3'- uacaaACUC-Ca----CGCGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32316 0.68 0.63406
Target:  5'- -----cGGGGUcgcaggGgGCCCGCGCGgCGCg -3'
miRNA:   3'- uacaaaCUCCA------CgCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 32688 0.67 0.725233
Target:  5'- gGUGgcugGAGGgGCGCCCGaccuGC-CCGCu -3'
miRNA:   3'- -UACaaa-CUCCaCGCGGGCg---UGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32896 0.7 0.552646
Target:  5'- -------cGGUGCGCgCCGCGCGCgaGCg -3'
miRNA:   3'- uacaaacuCCACGCG-GGCGUGCGg-CG- -5'
6345 5' -58.2 NC_001847.1 + 33215 0.66 0.773488
Target:  5'- -cGggUGGcucGGcuugGCGCCgCGCcggGCGCCGCg -3'
miRNA:   3'- uaCaaACU---CCa---CGCGG-GCG---UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 33649 0.69 0.572803
Target:  5'- -----cGAGGcGCGCgCGCGCgugGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCGCGgGCGUG---CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 33688 0.66 0.754502
Target:  5'- -----aGAGGcgcagGCGCUCGCGgCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCGGGCGU-GCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 33859 0.66 0.791968
Target:  5'- -----aGAGGacUGCGCgCGCuucuugcaggagGCGCCGCc -3'
miRNA:   3'- uacaaaCUCC--ACGCGgGCG------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 34623 0.73 0.369172
Target:  5'- -----cGAGGaaguccgGCGCCUGCGCGCCGa -3'
miRNA:   3'- uacaaaCUCCa------CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 34684 0.69 0.62381
Target:  5'- -cGgcagGAGGaGCGCUggcgcgaggacuUGCGCGCCGCg -3'
miRNA:   3'- uaCaaa-CUCCaCGCGG------------GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 34761 0.67 0.715303
Target:  5'- -----cGAGcugGCGCggCUGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCca-CGCG--GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 35454 0.66 0.791968
Target:  5'- -----cGGcGGccCGCgCCGCGCGCCGCa -3'
miRNA:   3'- uacaaaCU-CCacGCG-GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 35974 0.68 0.654548
Target:  5'- -----cGAGG-GCGCCaaggcgCGCGCaGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCGCGG------GCGUG-CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 36541 0.67 0.735082
Target:  5'- -----cGGGGUGcCGCgCCGCccaaGCGCCGg -3'
miRNA:   3'- uacaaaCUCCAC-GCG-GGCG----UGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 36796 0.67 0.729182
Target:  5'- --cUUUGGGGcguuuugccgcuucgUGCGCCaccgGCGCGCCGa -3'
miRNA:   3'- uacAAACUCC---------------ACGCGGg---CGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 38031 0.69 0.603335
Target:  5'- cUGU---GGGcGCGCgCCGcCGCGCCGCc -3'
miRNA:   3'- uACAaacUCCaCGCG-GGC-GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 38095 0.69 0.613566
Target:  5'- -----cGGGGaaaGCaGCCCGgACGCCGCu -3'
miRNA:   3'- uacaaaCUCCa--CG-CGGGCgUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 38126 0.66 0.780018
Target:  5'- ------cGGGUGCGCCgggcaccgagucuuCGCGCGgCGCg -3'
miRNA:   3'- uacaaacUCCACGCGG--------------GCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 38719 0.67 0.735082
Target:  5'- -----cGGGGccGCGCCUGC-CGCCGg -3'
miRNA:   3'- uacaaaCUCCa-CGCGGGCGuGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.