miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 119044 0.69 0.62381
Target:  5'- cUGUggGAagcGGUaCGCCgGCACGCgCGCg -3'
miRNA:   3'- uACAaaCU---CCAcGCGGgCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 66203 0.73 0.369172
Target:  5'- cUGgcugGAGGcGCaGCCCGCGgcCGCCGCg -3'
miRNA:   3'- uACaaa-CUCCaCG-CGGGCGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 106737 0.7 0.552646
Target:  5'- -------cGGUugcGCGCCCGCgcugGCGCCGCg -3'
miRNA:   3'- uacaaacuCCA---CGCGGGCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 98151 0.69 0.572803
Target:  5'- -----cGAGGUGUuaaGCagcaGCACGCCGCg -3'
miRNA:   3'- uacaaaCUCCACG---CGgg--CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 60159 0.69 0.572803
Target:  5'- -----cGGGGUGCGCCaCGCcCGCgaGCg -3'
miRNA:   3'- uacaaaCUCCACGCGG-GCGuGCGg-CG- -5'
6345 5' -58.2 NC_001847.1 + 59895 0.74 0.3228
Target:  5'- -cGUUggcgagGAGGgcgGCGCgCGCGCGCgGCg -3'
miRNA:   3'- uaCAAa-----CUCCa--CGCGgGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 30240 0.72 0.446806
Target:  5'- -----cGAGGUGCGCgugUCGCugGCgGCg -3'
miRNA:   3'- uacaaaCUCCACGCG---GGCGugCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 26973 0.71 0.484107
Target:  5'- ----aUGAGGUGCGCgCGCagcGCGuCUGCg -3'
miRNA:   3'- uacaaACUCCACGCGgGCG---UGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 113201 0.71 0.503309
Target:  5'- -------cGGUGcCGCCCGCGaGCCGCg -3'
miRNA:   3'- uacaaacuCCAC-GCGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 124329 0.71 0.455983
Target:  5'- -----aGAGGcaaggcGCGCCUGCGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 68453 0.75 0.301296
Target:  5'- -----aGAGGUccGCGCCCGCGgccggggcccCGCCGCg -3'
miRNA:   3'- uacaaaCUCCA--CGCGGGCGU----------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 134519 0.75 0.301296
Target:  5'- -gGgcgGGGGgagGCGCgggCCGCGCGCCGCu -3'
miRNA:   3'- uaCaaaCUCCa--CGCG---GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 18456 0.68 0.63406
Target:  5'- ----gUGcGGUgccGCGCCCGCAgCGCCGg -3'
miRNA:   3'- uacaaACuCCA---CGCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 22933 0.68 0.664769
Target:  5'- -gGUUguGGGUGCGCagguagGCAuCGCCGCa -3'
miRNA:   3'- uaCAAacUCCACGCGgg----CGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 29908 0.68 0.685124
Target:  5'- -----cGAaGUGCGCCCGCcugugcccgcGCGcCCGCg -3'
miRNA:   3'- uacaaaCUcCACGCGGGCG----------UGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 104382 0.67 0.69322
Target:  5'- -----cGAGGccagcacggcgcGCGCCaGCGCGCCGCu -3'
miRNA:   3'- uacaaaCUCCa-----------CGCGGgCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 82104 0.68 0.664769
Target:  5'- -----gGAGG-GCGCCUGCGuuugcgccUGCCGCc -3'
miRNA:   3'- uacaaaCUCCaCGCGGGCGU--------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 34684 0.69 0.62381
Target:  5'- -cGgcagGAGGaGCGCUggcgcgaggacuUGCGCGCCGCg -3'
miRNA:   3'- uaCaaa-CUCCaCGCGG------------GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 83467 0.68 0.644309
Target:  5'- -----cGAcGGcGCGCgCGUACGCCGCc -3'
miRNA:   3'- uacaaaCU-CCaCGCGgGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 23526 0.68 0.654548
Target:  5'- -----cGAGGUcGcCGCCCGUgaagACGCCGUu -3'
miRNA:   3'- uacaaaCUCCA-C-GCGGGCG----UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.