miRNA display CGI


Results 61 - 80 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 97437 0.7 0.532709
Target:  5'- ---cUUGuuGcUGCGCagCCGCGCGCCGCa -3'
miRNA:   3'- uacaAACucC-ACGCG--GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 98151 0.69 0.572803
Target:  5'- -----cGAGGUGUuaaGCagcaGCACGCCGCg -3'
miRNA:   3'- uacaaaCUCCACG---CGgg--CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 68453 0.75 0.301296
Target:  5'- -----aGAGGUccGCGCCCGCGgccggggcccCGCCGCg -3'
miRNA:   3'- uacaaaCUCCA--CGCGGGCGU----------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 15276 0.74 0.315507
Target:  5'- cAUGgccuuugUGGGGUaCGCCUGCugGCUGCg -3'
miRNA:   3'- -UACaa-----ACUCCAcGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 122568 0.74 0.337761
Target:  5'- -aGUgcGAGG-GCGCCgCGUACGCgGCg -3'
miRNA:   3'- uaCAaaCUCCaCGCGG-GCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 34623 0.73 0.369172
Target:  5'- -----cGAGGaaguccgGCGCCUGCGCGCCGa -3'
miRNA:   3'- uacaaaCUCCa------CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 30240 0.72 0.446806
Target:  5'- -----cGAGGUGCGCgugUCGCugGCgGCg -3'
miRNA:   3'- uacaaaCUCCACGCG---GGCGugCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 3975 0.71 0.465262
Target:  5'- -----cGAGGUGgGCCgugaGCACGCCaGCg -3'
miRNA:   3'- uacaaaCUCCACgCGGg---CGUGCGG-CG- -5'
6345 5' -58.2 NC_001847.1 + 132382 0.71 0.474637
Target:  5'- -----cGGGGgcgccgGCGCCgGCGcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 94233 0.71 0.493665
Target:  5'- ------cGGG-GCGCCCGCGCGgCGCc -3'
miRNA:   3'- uacaaacUCCaCGCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 2575 0.68 0.685124
Target:  5'- -----cGcGG-GCGCCUGCGCGgCCGCc -3'
miRNA:   3'- uacaaaCuCCaCGCGGGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 67455 0.68 0.674964
Target:  5'- -----cGAGGUccaGCGCgCGCGCggcgGCCGCg -3'
miRNA:   3'- uacaaaCUCCA---CGCGgGCGUG----CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 87660 0.69 0.581931
Target:  5'- cUGUUUGGGcUGCGCCgcauggcccgggCGCuggggcugcugcgGCGCCGCg -3'
miRNA:   3'- uACAAACUCcACGCGG------------GCG-------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 42456 0.69 0.593127
Target:  5'- cGUGggcagaGGGUGCGuuccgcgcCCCGUACGUCGCg -3'
miRNA:   3'- -UACaaac--UCCACGC--------GGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 34684 0.69 0.62381
Target:  5'- -cGgcagGAGGaGCGCUggcgcgaggacuUGCGCGCCGCg -3'
miRNA:   3'- uaCaaa-CUCCaCGCGG------------GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 4287 0.68 0.630984
Target:  5'- -----cGAGGcgcGCGCCggcgccuugguacuCGCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCa--CGCGG--------------GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 88553 0.68 0.644309
Target:  5'- cGUGgcgUGAcc-GCGCUCGCGCGCgGCg -3'
miRNA:   3'- -UACaa-ACUccaCGCGGGCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 118968 0.68 0.644309
Target:  5'- -----cGAGGUGCGCUaCGCgacgaGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCACGCGG-GCG-----UGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 22933 0.68 0.664769
Target:  5'- -gGUUguGGGUGCGCagguagGCAuCGCCGCa -3'
miRNA:   3'- uaCAAacUCCACGCGgg----CGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 109126 0.68 0.668851
Target:  5'- --uUUUGGuGGUuggcccuuuuugugcGCGCCUGCGCGcCCGCc -3'
miRNA:   3'- uacAAACU-CCA---------------CGCGGGCGUGC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.