miRNA display CGI


Results 81 - 100 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 32139 0.69 0.593127
Target:  5'- ----cUGGGcGccgccGCGCCCGCgcACGCCGCg -3'
miRNA:   3'- uacaaACUC-Ca----CGCGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 65431 0.69 0.613566
Target:  5'- -cGg--GAGGcgGCaG-CCGCGCGCCGCg -3'
miRNA:   3'- uaCaaaCUCCa-CG-CgGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 119044 0.69 0.62381
Target:  5'- cUGUggGAagcGGUaCGCCgGCACGCgCGCg -3'
miRNA:   3'- uACAaaCU---CCAcGCGGgCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 18456 0.68 0.63406
Target:  5'- ----gUGcGGUgccGCGCCCGCAgCGCCGg -3'
miRNA:   3'- uacaaACuCCA---CGCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 67707 0.68 0.644309
Target:  5'- -----cGAGGUGCuCgaGCGCGCCGUa -3'
miRNA:   3'- uacaaaCUCCACGcGggCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 22933 0.68 0.664769
Target:  5'- -gGUUguGGGUGCGCagguagGCAuCGCCGCa -3'
miRNA:   3'- uaCAAacUCCACGCGgg----CGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 109126 0.68 0.668851
Target:  5'- --uUUUGGuGGUuggcccuuuuugugcGCGCCUGCGCGcCCGCc -3'
miRNA:   3'- uacAAACU-CCA---------------CGCGGGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 94233 0.71 0.493665
Target:  5'- ------cGGG-GCGCCCGCGCGgCGCc -3'
miRNA:   3'- uacaaacUCCaCGCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 132382 0.71 0.474637
Target:  5'- -----cGGGGgcgccgGCGCCgGCGcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa-----CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 3975 0.71 0.465262
Target:  5'- -----cGAGGUGgGCCgugaGCACGCCaGCg -3'
miRNA:   3'- uacaaaCUCCACgCGGg---CGUGCGG-CG- -5'
6345 5' -58.2 NC_001847.1 + 133029 0.67 0.70229
Target:  5'- -----cGAGGcGCuggccgagaucgcgGCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCG--------------CGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 34761 0.67 0.715303
Target:  5'- -----cGAGcugGCGCggCUGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCca-CGCG--GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 6962 0.67 0.725233
Target:  5'- -----cGGGGUcGCggcggcgcuuccGCCCGCGgGCCGCc -3'
miRNA:   3'- uacaaaCUCCA-CG------------CGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 38719 0.67 0.735082
Target:  5'- -----cGGGGccGCGCCUGC-CGCCGg -3'
miRNA:   3'- uacaaaCUCCa-CGCGGGCGuGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 120097 0.67 0.735082
Target:  5'- -cGg--GAGauaaaGCGCCCGCGCGUCGg -3'
miRNA:   3'- uaCaaaCUCca---CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 68453 0.75 0.301296
Target:  5'- -----aGAGGUccGCGCCCGCGgccggggcccCGCCGCg -3'
miRNA:   3'- uacaaaCUCCA--CGCGGGCGU----------GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 15276 0.74 0.315507
Target:  5'- cAUGgccuuugUGGGGUaCGCCUGCugGCUGCg -3'
miRNA:   3'- -UACaa-----ACUCCAcGCGGGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 122568 0.74 0.337761
Target:  5'- -aGUgcGAGG-GCGCCgCGUACGCgGCg -3'
miRNA:   3'- uaCAaaCUCCaCGCGG-GCGUGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 34623 0.73 0.369172
Target:  5'- -----cGAGGaaguccgGCGCCUGCGCGCCGa -3'
miRNA:   3'- uacaaaCUCCa------CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 30240 0.72 0.446806
Target:  5'- -----cGAGGUGCGCgugUCGCugGCgGCg -3'
miRNA:   3'- uacaaaCUCCACGCG---GGCGugCGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.