miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 47891 0.69 0.593127
Target:  5'- ----------cGCGCCCGCGCGCCGg -3'
miRNA:   3'- uacaaacuccaCGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 32139 0.69 0.593127
Target:  5'- ----cUGGGcGccgccGCGCCCGCgcACGCCGCg -3'
miRNA:   3'- uacaaACUC-Ca----CGCGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 60159 0.69 0.572803
Target:  5'- -----cGGGGUGCGCCaCGCcCGCgaGCg -3'
miRNA:   3'- uacaaaCUCCACGCGG-GCGuGCGg-CG- -5'
6345 5' -58.2 NC_001847.1 + 55464 0.7 0.532709
Target:  5'- -----cGGGGcGCGCgCCGCGCuaGCCGCu -3'
miRNA:   3'- uacaaaCUCCaCGCG-GGCGUG--CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 4287 0.68 0.630984
Target:  5'- -----cGAGGcgcGCGCCggcgccuugguacuCGCGCGCCGCc -3'
miRNA:   3'- uacaaaCUCCa--CGCGG--------------GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 119044 0.69 0.62381
Target:  5'- cUGUggGAagcGGUaCGCCgGCACGCgCGCg -3'
miRNA:   3'- uACAaaCU---CCAcGCGGgCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 38031 0.69 0.603335
Target:  5'- cUGU---GGGcGCGCgCCGcCGCGCCGCc -3'
miRNA:   3'- uACAaacUCCaCGCG-GGC-GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 18456 0.68 0.63406
Target:  5'- ----gUGcGGUgccGCGCCCGCAgCGCCGg -3'
miRNA:   3'- uacaaACuCCA---CGCGGGCGU-GCGGCg -5'
6345 5' -58.2 NC_001847.1 + 118968 0.68 0.644309
Target:  5'- -----cGAGGUGCGCUaCGCgacgaGCGCgGCg -3'
miRNA:   3'- uacaaaCUCCACGCGG-GCG-----UGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 67707 0.68 0.644309
Target:  5'- -----cGAGGUGCuCgaGCGCGCCGUa -3'
miRNA:   3'- uacaaaCUCCACGcGggCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 135129 0.68 0.63406
Target:  5'- -----cGGGGUcgcaggGgGCCCGCGCGgCGCg -3'
miRNA:   3'- uacaaaCUCCA------CgCGGGCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 32093 0.69 0.602314
Target:  5'- uUGggggGAGGggggaaacgcggcUGCgGCCCGCcCGCCGCc -3'
miRNA:   3'- uACaaa-CUCC-------------ACG-CGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 116213 0.7 0.522836
Target:  5'- cGUGUUUGAGGcaacgGgGCCUGCuC-CCGCg -3'
miRNA:   3'- -UACAAACUCCa----CgCGGGCGuGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 60827 0.78 0.190347
Target:  5'- gAUGgcgcGAGGgGCGCCCGCGgCGCUGCg -3'
miRNA:   3'- -UACaaa-CUCCaCGCGGGCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 131818 0.68 0.663748
Target:  5'- -----gGAGGccgGCGCCgGCggcagcggcgcccGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa--CGCGGgCG-------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 67455 0.68 0.674964
Target:  5'- -----cGAGGUccaGCGCgCGCGCggcgGCCGCg -3'
miRNA:   3'- uacaaaCUCCA---CGCGgGCGUG----CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 48765 0.68 0.674964
Target:  5'- ----------cGCGCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaacuccaCGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 35974 0.68 0.654548
Target:  5'- -----cGAGG-GCGCCaaggcgCGCGCaGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCGCGG------GCGUG-CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 119112 0.68 0.654548
Target:  5'- ------cGGGUGCGCCCGgC-CGCUGUa -3'
miRNA:   3'- uacaaacUCCACGCGGGC-GuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 23526 0.68 0.654548
Target:  5'- -----cGAGGUcGcCGCCCGUgaagACGCCGUu -3'
miRNA:   3'- uacaaaCUCCA-C-GCGGGCG----UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.