miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 40352 0.67 0.715303
Target:  5'- ---cUUGAGGUGCGCgUGgAgGCgGCu -3'
miRNA:   3'- uacaAACUCCACGCGgGCgUgCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 108372 0.67 0.714306
Target:  5'- -----gGAGG-GCGCgCGCACugaccagGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCGCGgGCGUG-------CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 68808 0.67 0.714306
Target:  5'- -------cGGcgGCGCCCGCGCcccacccGCCGCa -3'
miRNA:   3'- uacaaacuCCa-CGCGGGCGUG-------CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 103170 0.67 0.713308
Target:  5'- -----cGAGGgcggcguccacgGgGCCCGC-CGCCGCc -3'
miRNA:   3'- uacaaaCUCCa-----------CgCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 122919 0.67 0.695239
Target:  5'- -cGUUcG-GGUGUGC--GCGCGCCGCg -3'
miRNA:   3'- uaCAAaCuCCACGCGggCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 43234 0.67 0.705302
Target:  5'- gGUGgcggUGGGG-GCGCgCGgGCGgCGCg -3'
miRNA:   3'- -UACaa--ACUCCaCGCGgGCgUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 133173 0.67 0.705302
Target:  5'- -----cGGGGagGCGCUgGCGgCGCCGCc -3'
miRNA:   3'- uacaaaCUCCa-CGCGGgCGU-GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 46774 0.67 0.715303
Target:  5'- -----cGGGGccgguccgccGCGCCCGCGCGCCc- -3'
miRNA:   3'- uacaaaCUCCa---------CGCGGGCGUGCGGcg -5'
6345 5' -58.2 NC_001847.1 + 6962 0.67 0.725233
Target:  5'- -----cGGGGUcGCggcggcgcuuccGCCCGCGgGCCGCc -3'
miRNA:   3'- uacaaaCUCCA-CG------------CGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 74392 0.67 0.715303
Target:  5'- ----cUGGGGgaccGCGCggccgCCGCGCGCgCGCg -3'
miRNA:   3'- uacaaACUCCa---CGCG-----GGCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 49708 0.67 0.705302
Target:  5'- -----cGGGGgcgcgGCGCCCGUgcaaguggGCGCCGg -3'
miRNA:   3'- uacaaaCUCCa----CGCGGGCG--------UGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 38719 0.67 0.735082
Target:  5'- -----cGGGGccGCGCCUGC-CGCCGg -3'
miRNA:   3'- uacaaaCUCCa-CGCGGGCGuGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 14136 0.67 0.735082
Target:  5'- gAUGggcGGGGcccGCGCCUGgGCGgCCGCu -3'
miRNA:   3'- -UACaaaCUCCa--CGCGGGCgUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 3339 0.67 0.732136
Target:  5'- -----aGGGGUGCguuaugccgacgcuGCCgGC-CGCCGCa -3'
miRNA:   3'- uacaaaCUCCACG--------------CGGgCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 121807 0.67 0.735082
Target:  5'- -----cGcGG-GCGCCUGCuCGCCGCc -3'
miRNA:   3'- uacaaaCuCCaCGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 12772 0.67 0.705302
Target:  5'- gAUGUcgcuGGacGCGCugugCCGCACGCCGCc -3'
miRNA:   3'- -UACAaacuCCa-CGCG----GGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 36796 0.67 0.729182
Target:  5'- --cUUUGGGGcguuuugccgcuucgUGCGCCaccgGCGCGCCGa -3'
miRNA:   3'- uacAAACUCC---------------ACGCGGg---CGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 53240 0.67 0.735082
Target:  5'- -------uGGUGCGCUgGCugcgGCGCCGCc -3'
miRNA:   3'- uacaaacuCCACGCGGgCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 102802 0.67 0.744841
Target:  5'- -----gGGGGcUGgGCCCccucCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCC-ACgCGGGc---GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 28177 0.67 0.741923
Target:  5'- -cGUU--GGGUuaccuggcggccgcGCGCCUGCGCGCCa- -3'
miRNA:   3'- uaCAAacUCCA--------------CGCGGGCGUGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.