Results 81 - 100 of 273 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 42326 | 0.69 | 0.572803 |
Target: 5'- aGUGUUucgugcUGuGG-GCGCCCGUgugGCGCgGCg -3' miRNA: 3'- -UACAA------ACuCCaCGCGGGCG---UGCGgCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 63578 | 0.69 | 0.572803 |
Target: 5'- ------aAGGUGCGCUCGC-UGCCGUg -3' miRNA: 3'- uacaaacUCCACGCGGGCGuGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 27692 | 0.69 | 0.572803 |
Target: 5'- -gGgcUGAGGcgcgcgaGCGCCgGCGgGCCGCc -3' miRNA: 3'- uaCaaACUCCa------CGCGGgCGUgCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 60159 | 0.69 | 0.572803 |
Target: 5'- -----cGGGGUGCGCCaCGCcCGCgaGCg -3' miRNA: 3'- uacaaaCUCCACGCGG-GCGuGCGg-CG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 57558 | 0.69 | 0.576856 |
Target: 5'- ------cGGGUGCcgccgugcgagcucgGCCCGCGCGgCCGCg -3' miRNA: 3'- uacaaacUCCACG---------------CGGGCGUGC-GGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 87660 | 0.69 | 0.581931 |
Target: 5'- cUGUUUGGGcUGCGCCgcauggcccgggCGCuggggcugcugcgGCGCCGCg -3' miRNA: 3'- uACAAACUCcACGCGG------------GCG-------------UGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 109390 | 0.69 | 0.582947 |
Target: 5'- -gGgcUGcGGUGCcgugccgccgccGCCCGC-CGCCGCu -3' miRNA: 3'- uaCaaACuCCACG------------CGGGCGuGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 116156 | 0.69 | 0.582947 |
Target: 5'- -----cGAGGcgcugGCGgCCGCggGCGCCGCg -3' miRNA: 3'- uacaaaCUCCa----CGCgGGCG--UGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 47891 | 0.69 | 0.593127 |
Target: 5'- ----------cGCGCCCGCGCGCCGg -3' miRNA: 3'- uacaaacuccaCGCGGGCGUGCGGCg -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 42456 | 0.69 | 0.593127 |
Target: 5'- cGUGggcagaGGGUGCGuuccgcgcCCCGUACGUCGCg -3' miRNA: 3'- -UACaaac--UCCACGC--------GGGCGUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 32139 | 0.69 | 0.593127 |
Target: 5'- ----cUGGGcGccgccGCGCCCGCgcACGCCGCg -3' miRNA: 3'- uacaaACUC-Ca----CGCGGGCG--UGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 70278 | 0.69 | 0.593127 |
Target: 5'- -----cGAGGacgcGCGCCUggcggggucgcgGCGCGCCGCg -3' miRNA: 3'- uacaaaCUCCa---CGCGGG------------CGUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 32093 | 0.69 | 0.602314 |
Target: 5'- uUGggggGAGGggggaaacgcggcUGCgGCCCGCcCGCCGCc -3' miRNA: 3'- uACaaa-CUCC-------------ACG-CGGGCGuGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 58890 | 0.69 | 0.603335 |
Target: 5'- -cGUUggcGAGGUGCGCCUcCAUGgCGUc -3' miRNA: 3'- uaCAAa--CUCCACGCGGGcGUGCgGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 52795 | 0.69 | 0.603335 |
Target: 5'- cAUGUgca--GUGCGCCCugGCGCCGCg -3' miRNA: 3'- -UACAaacucCACGCGGGcgUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 38031 | 0.69 | 0.603335 |
Target: 5'- cUGU---GGGcGCGCgCCGcCGCGCCGCc -3' miRNA: 3'- uACAaacUCCaCGCG-GGC-GUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 40975 | 0.69 | 0.613566 |
Target: 5'- -----cGAGGcggccGCGCCCaGCAgcCGCCGCg -3' miRNA: 3'- uacaaaCUCCa----CGCGGG-CGU--GCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 38095 | 0.69 | 0.613566 |
Target: 5'- -----cGGGGaaaGCaGCCCGgACGCCGCu -3' miRNA: 3'- uacaaaCUCCa--CG-CGGGCgUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 12558 | 0.69 | 0.613566 |
Target: 5'- -----cGcAGGUGCGCaaCGgGCGCCGCg -3' miRNA: 3'- uacaaaC-UCCACGCGg-GCgUGCGGCG- -5' |
|||||||
6345 | 5' | -58.2 | NC_001847.1 | + | 52644 | 0.69 | 0.613566 |
Target: 5'- -cGUUgccGAuGGc-CGCCCGCACGgCCGCg -3' miRNA: 3'- uaCAAa--CU-CCacGCGGGCGUGC-GGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home