miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 98151 0.69 0.572803
Target:  5'- -----cGAGGUGUuaaGCagcaGCACGCCGCg -3'
miRNA:   3'- uacaaaCUCCACG---CGgg--CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 33649 0.69 0.572803
Target:  5'- -----cGAGGcGCGCgCGCGCgugGCCGCg -3'
miRNA:   3'- uacaaaCUCCaCGCGgGCGUG---CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 60159 0.69 0.572803
Target:  5'- -----cGGGGUGCGCCaCGCcCGCgaGCg -3'
miRNA:   3'- uacaaaCUCCACGCGG-GCGuGCGg-CG- -5'
6345 5' -58.2 NC_001847.1 + 130505 0.69 0.572803
Target:  5'- -gGgcUGAGGcgcgcgaGCGCCgGCGgGCCGCc -3'
miRNA:   3'- uaCaaACUCCa------CGCGGgCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 57558 0.69 0.576856
Target:  5'- ------cGGGUGCcgccgugcgagcucgGCCCGCGCGgCCGCg -3'
miRNA:   3'- uacaaacUCCACG---------------CGGGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 87660 0.69 0.581931
Target:  5'- cUGUUUGGGcUGCGCCgcauggcccgggCGCuggggcugcugcgGCGCCGCg -3'
miRNA:   3'- uACAAACUCcACGCGG------------GCG-------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 116156 0.69 0.582947
Target:  5'- -----cGAGGcgcugGCGgCCGCggGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCgGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 109390 0.69 0.582947
Target:  5'- -gGgcUGcGGUGCcgugccgccgccGCCCGC-CGCCGCu -3'
miRNA:   3'- uaCaaACuCCACG------------CGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 70278 0.69 0.593127
Target:  5'- -----cGAGGacgcGCGCCUggcggggucgcgGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa---CGCGGG------------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32139 0.69 0.593127
Target:  5'- ----cUGGGcGccgccGCGCCCGCgcACGCCGCg -3'
miRNA:   3'- uacaaACUC-Ca----CGCGGGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 42456 0.69 0.593127
Target:  5'- cGUGggcagaGGGUGCGuuccgcgcCCCGUACGUCGCg -3'
miRNA:   3'- -UACaaac--UCCACGC--------GGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 47891 0.69 0.593127
Target:  5'- ----------cGCGCCCGCGCGCCGg -3'
miRNA:   3'- uacaaacuccaCGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 32093 0.69 0.602314
Target:  5'- uUGggggGAGGggggaaacgcggcUGCgGCCCGCcCGCCGCc -3'
miRNA:   3'- uACaaa-CUCC-------------ACG-CGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 38031 0.69 0.603335
Target:  5'- cUGU---GGGcGCGCgCCGcCGCGCCGCc -3'
miRNA:   3'- uACAaacUCCaCGCG-GGC-GUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 58890 0.69 0.603335
Target:  5'- -cGUUggcGAGGUGCGCCUcCAUGgCGUc -3'
miRNA:   3'- uaCAAa--CUCCACGCGGGcGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 52795 0.69 0.603335
Target:  5'- cAUGUgca--GUGCGCCCugGCGCCGCg -3'
miRNA:   3'- -UACAaacucCACGCGGGcgUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 52644 0.69 0.613566
Target:  5'- -cGUUgccGAuGGc-CGCCCGCACGgCCGCg -3'
miRNA:   3'- uaCAAa--CU-CCacGCGGGCGUGC-GGCG- -5'
6345 5' -58.2 NC_001847.1 + 40975 0.69 0.613566
Target:  5'- -----cGAGGcggccGCGCCCaGCAgcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCGGG-CGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 38095 0.69 0.613566
Target:  5'- -----cGGGGaaaGCaGCCCGgACGCCGCu -3'
miRNA:   3'- uacaaaCUCCa--CG-CGGGCgUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 12558 0.69 0.613566
Target:  5'- -----cGcAGGUGCGCaaCGgGCGCCGCg -3'
miRNA:   3'- uacaaaC-UCCACGCGg-GCgUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.