miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 120097 0.67 0.735082
Target:  5'- -cGg--GAGauaaaGCGCCCGCGCGUCGg -3'
miRNA:   3'- uaCaaaCUCca---CGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 53240 0.67 0.735082
Target:  5'- -------uGGUGCGCUgGCugcgGCGCCGCc -3'
miRNA:   3'- uacaaacuCCACGCGGgCG----UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 121807 0.67 0.735082
Target:  5'- -----cGcGG-GCGCCUGCuCGCCGCc -3'
miRNA:   3'- uacaaaCuCCaCGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 59498 0.67 0.735082
Target:  5'- -cGgcagGGGGUGCGCcgaggCCGCaccggcuugguGCGCUGCg -3'
miRNA:   3'- uaCaaa-CUCCACGCG-----GGCG-----------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 129660 0.67 0.735082
Target:  5'- -----cGAGGUugcgGCGgCCGCugcCGCCGCc -3'
miRNA:   3'- uacaaaCUCCA----CGCgGGCGu--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 12200 0.67 0.734101
Target:  5'- gAUGUcguAGGUGCGCUucuggcuUGCGCGgCGCg -3'
miRNA:   3'- -UACAaacUCCACGCGG-------GCGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 3339 0.67 0.732136
Target:  5'- -----aGGGGUGCguuaugccgacgcuGCCgGC-CGCCGCa -3'
miRNA:   3'- uacaaaCUCCACG--------------CGGgCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 36796 0.67 0.729182
Target:  5'- --cUUUGGGGcguuuugccgcuucgUGCGCCaccgGCGCGCCGa -3'
miRNA:   3'- uacAAACUCC---------------ACGCGGg---CGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 6962 0.67 0.725233
Target:  5'- -----cGGGGUcGCggcggcgcuuccGCCCGCGgGCCGCc -3'
miRNA:   3'- uacaaaCUCCA-CG------------CGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 115856 0.67 0.725233
Target:  5'- -cGUUUGuuG-GCgGCCCGCcgcacagacgcuGCGCCGCc -3'
miRNA:   3'- uaCAAACucCaCG-CGGGCG------------UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 32688 0.67 0.725233
Target:  5'- gGUGgcugGAGGgGCGCCCGaccuGC-CCGCu -3'
miRNA:   3'- -UACaaa-CUCCaCGCGGGCg---UGcGGCG- -5'
6345 5' -58.2 NC_001847.1 + 54267 0.67 0.725233
Target:  5'- uAUGUcgcGGGcGUGCuGCCggacggccucgaCGCGCGCCGCc -3'
miRNA:   3'- -UACAaa-CUC-CACG-CGG------------GCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 40352 0.67 0.715303
Target:  5'- ---cUUGAGGUGCGCgUGgAgGCgGCu -3'
miRNA:   3'- uacaAACUCCACGCGgGCgUgCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 45435 0.67 0.715303
Target:  5'- ---cUUGAGcccaggGCGCCCGuCGCGgCGCg -3'
miRNA:   3'- uacaAACUCca----CGCGGGC-GUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 52245 0.67 0.715303
Target:  5'- -------cGG-GCG-CCGCGCGCCGCg -3'
miRNA:   3'- uacaaacuCCaCGCgGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 68923 0.67 0.715303
Target:  5'- ----cUGAGGUucggcgcgGCGgCCGCGgGCUGCg -3'
miRNA:   3'- uacaaACUCCA--------CGCgGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 100867 0.67 0.715303
Target:  5'- -----cGAGcGcgGCGCCCaGC-CGCCGCg -3'
miRNA:   3'- uacaaaCUC-Ca-CGCGGG-CGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 46774 0.67 0.715303
Target:  5'- -----cGGGGccgguccgccGCGCCCGCGCGCCc- -3'
miRNA:   3'- uacaaaCUCCa---------CGCGGGCGUGCGGcg -5'
6345 5' -58.2 NC_001847.1 + 74392 0.67 0.715303
Target:  5'- ----cUGGGGgaccGCGCggccgCCGCGCGCgCGCg -3'
miRNA:   3'- uacaaACUCCa---CGCG-----GGCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 34761 0.67 0.715303
Target:  5'- -----cGAGcugGCGCggCUGCGCGCCGCg -3'
miRNA:   3'- uacaaaCUCca-CGCG--GGCGUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.