miRNA display CGI


Results 81 - 100 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 5' -58.2 NC_001847.1 + 40352 0.67 0.715303
Target:  5'- ---cUUGAGGUGCGCgUGgAgGCgGCu -3'
miRNA:   3'- uacaAACUCCACGCGgGCgUgCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 40975 0.69 0.613566
Target:  5'- -----cGAGGcggccGCGCCCaGCAgcCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCGGG-CGU--GCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 41186 0.65 0.797403
Target:  5'- cGUGUUaaGAGG-GCGCCCagaaaagGCGCaguaucgcgagaauGCCGCa -3'
miRNA:   3'- -UACAAa-CUCCaCGCGGG-------CGUG--------------CGGCG- -5'
6345 5' -58.2 NC_001847.1 + 42326 0.69 0.572803
Target:  5'- aGUGUUucgugcUGuGG-GCGCCCGUgugGCGCgGCg -3'
miRNA:   3'- -UACAA------ACuCCaCGCGGGCG---UGCGgCG- -5'
6345 5' -58.2 NC_001847.1 + 42456 0.69 0.593127
Target:  5'- cGUGggcagaGGGUGCGuuccgcgcCCCGUACGUCGCg -3'
miRNA:   3'- -UACaaac--UCCACGC--------GGGCGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 42474 0.66 0.754502
Target:  5'- gGUGcuggUGGGGcgGCGCgCCGaaGCGCUGCg -3'
miRNA:   3'- -UACaa--ACUCCa-CGCG-GGCg-UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 42920 0.66 0.754502
Target:  5'- -----cGAGaGcGCGCgCUGCugGCCGCc -3'
miRNA:   3'- uacaaaCUC-CaCGCG-GGCGugCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 43147 0.66 0.782796
Target:  5'- -----cGGGcGcUGCGCCCGCA-GUCGCu -3'
miRNA:   3'- uacaaaCUC-C-ACGCGGGCGUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 43234 0.67 0.705302
Target:  5'- gGUGgcggUGGGG-GCGCgCGgGCGgCGCg -3'
miRNA:   3'- -UACaa--ACUCCaCGCGgGCgUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 43544 0.66 0.754502
Target:  5'- -----cGAGGagaaGCGCcgCCGCgaGCGCCGCg -3'
miRNA:   3'- uacaaaCUCCa---CGCG--GGCG--UGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 44444 0.66 0.764054
Target:  5'- -----cGGGGgcgcgGCGCgCgGCACGCgCGCg -3'
miRNA:   3'- uacaaaCUCCa----CGCG-GgCGUGCG-GCG- -5'
6345 5' -58.2 NC_001847.1 + 44931 0.66 0.791058
Target:  5'- cGUGUcgcuGGG-GCGCUCgggcugggcgacgGCGCGCCGCa -3'
miRNA:   3'- -UACAaac-UCCaCGCGGG-------------CGUGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 45152 0.69 0.62381
Target:  5'- -----cGGGGUGCaGCCC-CGCGgCGCg -3'
miRNA:   3'- uacaaaCUCCACG-CGGGcGUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 45435 0.67 0.715303
Target:  5'- ---cUUGAGcccaggGCGCCCGuCGCGgCGCg -3'
miRNA:   3'- uacaAACUCca----CGCGGGC-GUGCgGCG- -5'
6345 5' -58.2 NC_001847.1 + 46751 0.74 0.330218
Target:  5'- -----cGAcGGcGCGCCCGCcCGCCGCg -3'
miRNA:   3'- uacaaaCU-CCaCGCGGGCGuGCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 46774 0.67 0.715303
Target:  5'- -----cGGGGccgguccgccGCGCCCGCGCGCCc- -3'
miRNA:   3'- uacaaaCUCCa---------CGCGGGCGUGCGGcg -5'
6345 5' -58.2 NC_001847.1 + 47891 0.69 0.593127
Target:  5'- ----------cGCGCCCGCGCGCCGg -3'
miRNA:   3'- uacaaacuccaCGCGGGCGUGCGGCg -5'
6345 5' -58.2 NC_001847.1 + 47979 0.68 0.685124
Target:  5'- gAUG-UUGAGGcUGuCGCUCGCGCugGCCaGCg -3'
miRNA:   3'- -UACaAACUCC-AC-GCGGGCGUG--CGG-CG- -5'
6345 5' -58.2 NC_001847.1 + 48542 0.7 0.532709
Target:  5'- -----cGAGGcGCGCCCGgA-GCCGCg -3'
miRNA:   3'- uacaaaCUCCaCGCGGGCgUgCGGCG- -5'
6345 5' -58.2 NC_001847.1 + 48765 0.68 0.674964
Target:  5'- ----------cGCGCCCGC-CGCCGCg -3'
miRNA:   3'- uacaaacuccaCGCGGGCGuGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.